RNA id: XR_005041210.1


Basic Information

Item Value
RNA id XR_005041210.1
length 2352
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110512370
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15516199 ~ 15525808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatgtctgtgagtataacagaacttatctagcaggcaaaacccagaggactaactgttcagaatttttttttcctcccatctctcttccctATATTGTCTTTGCCATTGGAAATTTAATAGAAATATACTTTCAGTTCCTATATCTTCCACACGATATTGCCAGTGTTTGGAATATGGCTGAGGTTATTTATTTGTCTTAGCAggaagtaggccaactcggaacGGGGGACCCTTTTGTGAGTTGCACAAGATGTGTAGAGCAGAGCTTTTTTCTTTTCGTtcatgtattgaatacagattgccccgtctacaatttgatcaatttattaacgtttaaaaatacccaatgttgtattacaaaagtagtttgaaatattttggcaaagtttataggcaacttttgaaatattttgtagtgaatttgcgtttttctaagctgtttttttctggatcaaacaggCTTTATCAATGGACATTTTCAACATATATGGAAGGAATTAATcgtacaaaaggaccaattgtgatgtttatgggacatattggagtgccaacaaaagaagctcaaagGTCTACTCAAAAGCATGTAGGATGAAGACAAGTCATCTCAAAGCTTTGTTTGGCTTCACCGAATTTCTCAGGTCCACTCAAAAGCATGTGGGATGAAAAGACAATTGTCATCTCACAGCTTCTTCTGACTTCATTGCTTTTCTCAGTCATTATTGAGGTTCAGTTGCCTATTTCACTTATGGGAGCGGCAGCTCCGGGCAGTGACATCACCCTTAGATgctctttgtcttcttctaaAAACCTGAACCTCAACCACCTGATTGTCAACTGGCAGCATGCAGAATCAGTGGTGGTCCACAGCTATTACCATGGAAGAGATCAGCTGGACAGAGTGTTGTTTACAAAGGATGGACTCATCTGTTTGAAGACCAGCTCGCTGTGGGAAATGTCTCACTTAGACTGAGTGGTGTGCAGCCGAGTGACCAGGGCAAAAACACTTGTGATGTGACAGATGAACAGGCTAGCACCCTGGAAAACCTAATACTTTTAGTGAGATGTTAGAAAGTATGTATTTTTGTCCTTTCAGATTTTTTAGGAATCTTGCATGTATGGGGGATAAATAGACATAAAAGTATTAAACTATCTGCGCAAAATCAACTTAGTTATCTACTTGCCTAAAGCCCTTTGCAGTCAGAATTCTCCTTTGTTAAGAGTTGAATATGAGTATTGTTGTTTCTGTTTACCCCTGGCCCCCTTCAAGAATCCACAGctcagctgtctatacagtcaTCCTGTGACAGCTTCATCatcaccctcacctcctcccaggGTTTCCCCCAGCCTGATGTGTGGTGGACAGACTCCATTGGAGGAGACATCTACAATTAGAGCCACTGCTAAATCGGTCTGGAAAGCAGGGGGCGCTATGAGGTCCACAGCTCCATGGAGGTCAGGCCAAACAGTACACTCACCATCATTGCTGAAATGAGACTGGAGGATCTCAATCAAAGCTTCACCCGCTCGCTCACCCTCCACCCACTCCCAGAATGCTGTGAGCTGCCTCTTGCAACCGGGGGCAGACCGGCTTTGGTATTATTAGGGATAGTTCTCTTAGCAGCTTCAGACGTCTGAAACACACCAACACCAGCTGATCCCACATGACTATACAACAGGACAAGATGAGGCTCATGAAACAGAGACTTGATACATCATGAACAAAAATTAGTTATAAAAGTCTAagcttacaggactgtttcaatGTCACAAatataggtgtgtgtgttgctgccTTCTGAAATATTTCCACTCCCTATTGGTAATGTATTATAGAGTACTGCTAGCAGTAGACTTTGCTACTCTCTGCAGCCCTATGTAATCCAGACTATTTTGTTTTCTTTGGGGATGCAGAGCTGTCATGAAGGTGAAGAGTGGCTgctttgaagagtctcaaatatacatttagatttgtttaacactttttttgattACGGCATGATTTCAtcaagtgttatttcatagttttgatgtcttcactattatgctacaatgtagaaaatagtacaaataaagaaaaacctttgaatgagttggtgtgtccaaacatttgactggtactgtacattttgtcCAATGTTACTGTCAAATGTGGCCTGGTAACAACAACTGGGAAAAGTACTATCCACCTTACAGTTGGGCTGGTTGTAAAAGTTGATGCTACATGACGTTGTGGATGTAACTGCAACGTCTGGGGCATATTACAGAAATATTTCACGTTATTACATGGTGCTTGGAGTCACTCTGTGAGACAGTTCATTACATTAATGATATACCGTTGCTGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260674 lncRNA downstream 42315 15473639 ~ 15473884 (-) True G227880
TU260564 lncRNA downstream 122861 15393062 ~ 15393338 (-) True G227803
TU260562 lncRNA downstream 123374 15392445 ~ 15392825 (-) True G227801
TU260560 lncRNA downstream 124244 15390592 ~ 15391955 (-) True G227799
TU260537 lncRNA downstream 125786 15389069 ~ 15390413 (-) True G227782
TU260842 lncRNA upstream 10557 15536365 ~ 15538315 (-) False LOC110512327
TU260843 lncRNA upstream 10557 15536365 ~ 15538315 (-) False LOC110512327
TU260852 lncRNA upstream 14205 15540013 ~ 15540218 (-) True G228047
TU260856 lncRNA upstream 17525 15543333 ~ 15567945 (-) True G228051
TU260875 lncRNA upstream 40361 15566169 ~ 15567031 (-) True G228070
XM_036970265.1 mRNA downstream 46187 15440734 ~ 15470012 (-) True LOC110519926
XM_036964193.1 mRNA downstream 109843 15397673 ~ 15406356 (-) True si:dkey-65b12.6
XM_021596795.2 mRNA downstream 285712 15216991 ~ 15230487 (-) True LOC110519925
XM_036970183.1 mRNA downstream 312053 15184818 ~ 15204146 (-) False LOC110519917
XM_036970186.1 mRNA downstream 312053 15184818 ~ 15204146 (-) True LOC110519917
XR_005041215.1 mRNA upstream 10555 15536363 ~ 15539657 (-) False LOC110512327
XM_021592788.2 mRNA upstream 10555 15536363 ~ 15539658 (-) False LOC110512327
XM_036970271.1 mRNA upstream 10555 15536363 ~ 15539658 (-) False LOC110512327
XR_005041212.1 mRNA upstream 10555 15536363 ~ 15539658 (-) False LOC110512327
XR_005041216.1 mRNA upstream 10555 15536363 ~ 15539658 (-) False LOC110512327
TU259832 other downstream 879489 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 991345 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 991345 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 1041033 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1514391 13999736 ~ 14001808 (-) True LOC110538195
TU260846 other upstream 10557 15536365 ~ 15538315 (-) True LOC110512327
TU260901 other upstream 75207 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 180426 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 261814 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1313581 16839389 ~ 16839839 (-) True G229373

Expression Profile