RNA id: XR_005041216.1


Basic Information

Item Value
RNA id XR_005041216.1
length 1534
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110512327
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15536363 ~ 15539677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACTTCCTTTATGCTTCCTTCTCGGCACATGGGGTATGAGCTAAAATGTCATTCCTTCACCACAAAgttgaaagaaaataaagaatAGTCAGTACAGGGATTATTAGAAGCCAGTTTCAAACAGTATGTGTCTCtctgtatatatttgtttttcaGGCTGCATGTGGTCTCAGTACTGTTTATTACCATGATATCATCAGTGGTAACTACAACAAGTCTACAACCCCGAGAAGTGGCAGCTCCGGGCAGTGACTTCACCCTTAACTGCTCTTTCCCTTCGTCTAAAAATCTGAACCTCAACCAACTGGTCATCAACTGGCAGCGTGGAGAATCAGAGGTGGTTCACAGCTATTACCATGGGAGAGATCAGCTGGAAAGACAGAGTGGTGTTTACAAGGGACGCACTCATCTGTTTGAAGACCAGCTCACTGTGGGAAATGCCTCACTTAGACTGAGTGGTGTGCAGCCGAGTGACCAGGGCCAATACACCTGTGACGTGACAGATGAACAGGGAGGCACCCTGGAAAAGCTACAACTTCTAGTGGCAGGGGTTTCCCCAGCCAGAGTTAGTGTGGAAAGGTGTGATGGACAGTAACACCACTATGGAATTGGACAGCAGGGGGCACTATGAGCTGAAGAGTGAGGTGACACTGTGGTTGAACAGCACTCTGACTGTTACAGCCGAGCTGAGACTGAGGGTTCTGGACCAGAGTTTCACCAAGTCTCTCACACTCCACCCACCACCAGTTTTTACCTAGTCCATTGGGATGTGATGAATGATGATACCATACTTGCACAATGGCCGTTGACCATGGGCTTCAAACAGTATGTGTCTCTCCAAATATTTTGTGCTGTGTGATGCCTGCCGAGAAGAGGAGCAGATTTTTTATGTATCCCCTGCTGCTTATGCTGCTGGGATTAGTGCTCCTGTTGTCCTGGAAGAGGTCTGAGCAGGAGACCAAAAAGGATAAGAAAACACAAGAATAGAATGACCTTCAGTCCATGGTCACTCAACAGGCATCATGCCAGAGCAATTATCATTGCTTGTTTACAGAGAAAACATAAAGGGAGGACAGCCTTGTTTACTAAAGTCAATTTTCATGGGAAGTCATTTGGTAAAATCTGAATTACACTACAATACTTTATACACAAAGTTCAACATGATAGAGTTGACACTTTGTATTGTCAAACAATACAGACGACACACTCACTAAAGATAGACAATGGGAGTTGCACACCACACCACTAGATGGTCATATGCACCTCTACTCCTAATCTACTTTCTCTTAAGGTTTCTTCCATGTAGCGAGTTTTTGCTTACTGCTACTTGCTCAGGGATTTAGCCCAGGTTACTGTGTAAATCACCTTTTACATCTGCAGATGTCTTACTGGGCTTTATAAATTACATGTATATATTGATTGAAATTATGGCAGCTATAGCGTCTAATGAAAGTTGTTACATGTGTGTTCCAGTCAGTGTATCATACTTTCCAGAATTTGTTATTTTGTAATACAAGGAGATGAAACCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260674 lncRNA downstream 62479 15473639 ~ 15473884 (-) True G227880
TU260564 lncRNA downstream 143025 15393062 ~ 15393338 (-) True G227803
TU260562 lncRNA downstream 143538 15392445 ~ 15392825 (-) True G227801
TU260560 lncRNA downstream 144408 15390592 ~ 15391955 (-) True G227799
TU260537 lncRNA downstream 145950 15389069 ~ 15390413 (-) True G227782
TU260852 lncRNA upstream 355 15540013 ~ 15540218 (-) True G228047
TU260856 lncRNA upstream 3675 15543333 ~ 15567945 (-) True G228051
TU260875 lncRNA upstream 26511 15566169 ~ 15567031 (-) True G228070
TU260983 lncRNA upstream 174663 15714321 ~ 15714521 (-) True G228148
TU260985 lncRNA upstream 179164 15718822 ~ 15719083 (-) True G228150
XR_005041210.1 mRNA downstream 10555 15516199 ~ 15525808 (-) False LOC110512370
XR_005041211.1 mRNA downstream 10555 15516199 ~ 15525808 (-) True LOC110512370
XM_036970265.1 mRNA downstream 66351 15440734 ~ 15470012 (-) True LOC110519926
XM_036964193.1 mRNA downstream 130007 15397673 ~ 15406356 (-) True si:dkey-65b12.6
XM_021596795.2 mRNA downstream 305876 15216991 ~ 15230487 (-) True LOC110519925
XM_021592768.2 mRNA upstream 88779 15628437 ~ 15631725 (-) True upk1a
XR_005041232.1 mRNA upstream 144314 15683972 ~ 15685054 (-) True LOC118946067
XM_036970409.1 mRNA upstream 261701 15801359 ~ 15817153 (-) True LOC110503794
XM_036964264.1 mRNA upstream 284420 15824078 ~ 15830026 (-) True LOC110503786
XM_021592693.2 mRNA upstream 313573 15853231 ~ 15861569 (-) True LOC110512120
TU259832 other downstream 899653 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 1011509 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 1011509 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 1061197 14428793 ~ 14475166 (-) True G227060
TU259117 other downstream 1534555 13999736 ~ 14001808 (-) True LOC110538195
TU260901 other upstream 61357 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 166576 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 247964 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1299731 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 1310314 16849972 ~ 16850199 (-) True G229380

Expression Profile