RNA id: XM_036970409.1


Basic Information

Item Value
RNA id XM_036970409.1
length 1870
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110503794
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15801359 ~ 15817153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTTGGGGGCGGGTGACAGATGACGATCGACTTCACTGTACAATACTTTGTGAAAGCCCGCTCTCCTGGTTGACACACACATTTGTGTTGAAGAAGCACGATGCTCCGAATTGTGTTATCCCGAACTTTGCCTCGAATCTCTGGCATTTCGAATTGTCAGTATTCTGCAGCCGCCATCCCGGTACCAAGCGCACAGCCCGAAGTCCATTACAACAAGCTGTTCATCAATAACGAGTGGCAGGATGCCGTCAGCAAGAGGTCCTTCCCCACCATCAACCCAGCCACAGGAGAGGTCATCTGTCAGGTGGCTGAGGCAGACAAGGCAGATGTGGACAAGGCTGTGAAGGCTGCCAGGGAGGCCTTCCGGTTTGGGTCACCATGGCGACGCATGGACGCGTCGGACCGCGGGCTGCTCCTGAGCCGGCTGGCAGACGCAATCGAGAGGGACACAGCCTACCTAGCGGAACTGGAGACCCTGGACAATGGGAAGCCCTATGCCGTATCCTACAGTGTGGACGTGCCCATGGTGGTCAAGTGCCTCAGGTACTATGCAGGCTGGGCAGATAAGTGGGAGGGGAAGACCATTCCCATTGATGGAGACTTCTTCTGCTACACCCGCCATGAGCCCATCGGTGTGTGTGGCCAGATCATCCCGTGGAACTTCCCTCTGCTGATGCAGGCATGGAAGCTGGGGCCAGCTCTGGCTACAGGCAACACTGTGGTGATGAAAGTGGCTGAGCAGACCCCCCTCACTGCCCTGTATGTGGCCAGTCTCATCAAGGAGgttgGTTTCCCTCCAGGTGTGGTGAACATCCTGCCTGGTATGGGTCCATCTGCTGGTTCTGCCATCGCCTCCCACATGGATGTGGATAAGGTGGCTTTCACAGGATCTACTGAGGTAGGTCACCTGATCCAGCAGGCATCTGGCTCCAGCAACCTGAAGAAGGTCACTCTGGAGCTGGGAGGAAAGAGCCCCAACATAATCATGTCTGATGCCAACAtgGCGGAGGCGGTGGAACAGTCCCACTTTGCCCTGTTCTTTAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGTACATACGTGCAGGACACCATCTATGATGAGTTTATGGAGCGCAGTGTGGCGCGGGCCAAGAGCAGGGTGGTGGGAGACCCCTTCAACATGAAGACTGAGCAGGGACCGCAGGTGGATGAGGAACAGTTCAAGAAGATTCTGGGCTACATCAGCAGTGGGAAGCGTGAGGGGGCCAAGCTGATGTGCGGGGGAGGAGTGGCTGCAGACCGTGGCTACTTCATCCAACCAACCATCTTTGGAGATGTCCAGGACGGCATGACCATCGCCCGTGAGGAGATCTTTGGGCCGGTGATGCAGATCCTGAAGTTTAAGACTCTGGAGGAGGTGGTTGAGAGAGCCAACGACACAAAGTACGGCCTGGCAGCTGCTGTCTTCACCAAAGACATCGACAAGGCCCACTACATCTCTAGCGGACTTCGCGCCGGCACTGTCTGGATTAACTGCTATGATGTGTTTGGAGCACAAGCCCCCTTCGGTGGCTACAAATATTCTGGTAACGGTCGTGAGCTGGGAGAGTATGGCCTGGACAACTACACTGAAGTGAAAACAGTAACGATCAAGGTCCCCCAGAAAAACTCGTAAAGACGTCAGAACTCTGCCTCCAATCAAGGAAAGGGAAGGCTCTACGGAACTAAATCAGCCTTTATTTTGTTTATAACAGAGTCCTCAGTTATTCAGTTGGACTTTAATATGGTGAATCCCTGCTACAATGCAGAGTAGTTTTGTACTCTTGTAGAGTGAAAGGGTGAACTTTGAAAGGATTTTGGATAATAAATGCACTTGATACACGCTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261069 lncRNA downstream 5608 15795513 ~ 15795751 (-) True G228207
TU261045 lncRNA downstream 9958 15787622 ~ 15791401 (-) False G228191
TU261042 lncRNA downstream 10031 15787622 ~ 15791328 (-) False G228191
TU261053 lncRNA downstream 10031 15787622 ~ 15791328 (-) True G228191
TU261046 lncRNA downstream 10194 15787622 ~ 15791165 (-) False G228191
TU261759 lncRNA upstream 35293 15852446 ~ 15853201 (-) False G228822
TU261760 lncRNA upstream 35293 15852446 ~ 15853201 (-) True G228822
TU261761 lncRNA upstream 41208 15858361 ~ 15858792 (-) True G228823
TU261822 lncRNA upstream 118166 15935319 ~ 15935521 (-) True LOC118944492
TU261858 lncRNA upstream 154405 15971558 ~ 15973267 (-) True G228889
XR_005041232.1 mRNA downstream 116305 15683972 ~ 15685054 (-) True LOC118946067
XM_021592768.2 mRNA downstream 169634 15628437 ~ 15631725 (-) True upk1a
XM_021592782.2 mRNA downstream 261682 15536363 ~ 15539677 (-) False LOC110512327
XM_036970298.1 mRNA downstream 261699 15536363 ~ 15539660 (-) False LOC110512327
XR_005041216.1 mRNA downstream 261701 15536363 ~ 15539658 (-) False LOC110512327
XM_036964264.1 mRNA upstream 6925 15824078 ~ 15830026 (-) True LOC110503786
XM_021592693.2 mRNA upstream 36078 15853231 ~ 15861569 (-) True LOC110512120
XM_036970514.1 mRNA upstream 83745 15900898 ~ 15912729 (-) True LOC110503781
XR_005039833.1 mRNA upstream 115665 15932818 ~ 15935444 (-) False LOC118944492
XR_005041267.1 mRNA upstream 147888 15965041 ~ 15965445 (-) True LOC118946082
TU261050 other downstream 10194 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 93094 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 199871 15601015 ~ 15601488 (-) True G228094
TU260846 other downstream 263044 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 1164649 14598789 ~ 14636710 (-) False LOC110503689
TU262386 other upstream 1022236 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 1032819 16849972 ~ 16850199 (-) True G229380
TU262748 other upstream 1227872 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 2158092 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 2276603 18093756 ~ 18131054 (-) False LOC110503747

Expression Profile