RNA id: XM_036974419.1


Basic Information

Item Value
RNA id XM_036974419.1
length 1676
RNA type mRNA
GC content 0.50
exon number 11
gene id hat1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49413492 ~ 49430082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGAGGGCGTGGTATGTTGCTGTCACAGGCAATCCAGATGGAAAACAAAcaagctagctagGGATGAACCCAATGGAGAAGAAGTTGGCAGAATATAAGTGTGACACCAACGAAGCAATCAGCTTAAAACTAGTCCGTTTCGCAGATGATTTGGAGGATGAAAGCACGACATTCCATCCAGAGTACAGCCACCAGCTTTATGGTGATGATGAGGTGGCTTTTGGATACAAAGGCCTTCAGATTCAGCTGTACTACAGTGCTGGAAACCTGAGCACCCTCTTCAAAGTGAAATACTCAGCCAGAGTCACAGAAAAGTTTGATTGTGTGGAGCCTGATGATGTTGAAGGGAAGATCCGGGAGATCATCCCCGCTGGGTTCAGCTGCAACACGGACGACTTCACCTCATTGTTGGAGAAGGAGACCAACTTCAAACCCTTCGGCACCCTGCTTCACACATACAACGTCCACAatgtggaggagggagaagactTTACCTACCAGATTCACAAGGTGGACTTGTCGTGCCCTGGATTCCGAGAGTACCACAAGCGCCTGCAAACCTTCCTCATGTGGTTCATTGAGACGGCCAGCTTCATCGACGTGGACGACGATCGTTGGGACTTCTTTCTCGTATTTGAGAAGTACAATAAGGATGGGGAGACGCTCTTCGCAACTGTTGGCTACATGACAGTTTATAATTACTATGTGTATCCAGACAAAACCCGACCACGTGTGAGCCAAATGCTGATCCTGCCGCCGTTCCAAGGAGAGGGTCATGGAGCCCAGCTGCTGGAGGCAGTGCACATGTTCTACTGCAATCTGCACAAAGTACAGGAcattacagCTGAAGACCCCTCAGAGAACTATGTGAAGCTGAGAGACTACGTTCTGGTCAAGCTTTGCCAAACACTGCCATCATTCTCCACAGACAAGCTTCCTTTGGGCTTCAGTGACGACATGTCCACAGAGGCCAGGGAGAAATTTAAGATCAACAAGAAACACGCACGACGAGTGTACGAAATCCTGCGTCTGAGGGTGACGGACATGAGCGATGAGACGAAAGCAAGGGATTACCGTCTGGAGGTCAAAAAGAGGCTATTTGCCCCTACCAAGaAGAACCAGCGGGAGATGACCAAGATGATGAAGTGTCTGCGGCCAGAGGAGCTGGCGTCCCACATCAGTCAGATGGACACGGCGCTTCAGCAGGAGGAGCTGGAGAAGAGCTACCAGGAACTACTGGCCGAGTACAGGAGAGTCATCGAGAGGCTAGCACAGGCCTGATCCAGGGGGCCTAATGTCAGCCCTGCCTACCCACTGtaacacaacccccccccaccctggCCCCTTCTCCTACCCTTCCTCCTTTCCACTGGTGGTCCTAGATGTACAGTAGTGGTGGAGCTGTGCGGTGCAGCTGGTTGGCTGCCTGGGGAAGGCCCACTCTGTGTCCCTTGTGTGTAATCACGCTGTGTGAGCTTTAGTGATTTGGCAATCATTCACAGGTGATAGGAACACCATCCGTACGGTCTGGCTGGGCAGAACATGCCTCCTTTTCATATAGAGAATAAGGGagaaaggttttttttttttttcaatatctGTCTAGCTTTTTCCTGAAGACATGTTGGTTTTGAAGCACTTCATactgaaataaatgttttttttgtacaTTGA

Function

GO:

id name namespace
GO:0006348 chromatin silencing at telomere biological_process
GO:0016573 histone acetylation biological_process
GO:0005634 nucleus cellular_component
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
K11303 HAT1, KAT1; histone acetyltransferase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303668 lncRNA upstream 30454 49333176 ~ 49385963 (+) True G267259
TU303643 lncRNA upstream 114862 49301268 ~ 49301555 (+) True G267235
TU303503 lncRNA upstream 131314 49283571 ~ 49285103 (+) True G267099
TU303625 lncRNA upstream 162203 49253953 ~ 49254214 (+) True G267217
TU303622 lncRNA upstream 165285 49250783 ~ 49251132 (+) True G267214
TU303728 lncRNA downstream 17443 49447525 ~ 49447786 (+) True G267308
TU303729 lncRNA downstream 18466 49448548 ~ 49448806 (+) True G267309
TU303735 lncRNA downstream 23646 49453728 ~ 49453950 (+) True G267315
TU303744 lncRNA downstream 35791 49465873 ~ 49466114 (+) True G267324
TU303767 lncRNA downstream 65515 49495597 ~ 49495810 (+) True G267347
XM_036974413.1 mRNA upstream 25822 49368762 ~ 49390595 (+) False dync1i2a
XM_036974415.1 mRNA upstream 25822 49368777 ~ 49390595 (+) False dync1i2a
XM_036974414.1 mRNA upstream 25822 49369099 ~ 49390595 (+) True dync1i2a
XM_021597156.2 mRNA upstream 48076 49365942 ~ 49368341 (+) True LOC110520104
XM_021597155.2 mRNA upstream 51599 49357526 ~ 49364818 (+) True dcaf17
XM_021597160.2 mRNA downstream 34569 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA downstream 34569 49464651 ~ 49470746 (+) False dlx1a
XM_036974423.1 mRNA downstream 34569 49464651 ~ 49470746 (+) True dlx1a
XM_021597163.2 mRNA downstream 99896 49529978 ~ 49556157 (+) False itga6a
XM_021597162.2 mRNA downstream 99897 49529979 ~ 49557537 (+) False itga6a
TU300304 other upstream 2584173 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2584213 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2584283 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3231613 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 3336992 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 80721 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 124416 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 406535 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 732219 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1172220 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile