RNA id: XM_036974414.1


Basic Information

Item Value
RNA id XM_036974414.1
length 3082
RNA type mRNA
GC content 0.50
exon number 17
gene id dync1i2a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49368762 ~ 49390595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTGGAAAGCTTAGGAGAAACCAGGTTTGTTACCAAACTACAAGTGAAACGTGGAGCGTacttttttgttttacatattgtTGCTAATAAAAACGTTTTGCGATTTAGTCGCCATGCCAGCCCTCCCGTTGTCTTTGAGTTGGCTGGCTAGCAGGCCGAGCTGACTCACTTGCACTTCATTGtgatatagctagctaacgttagttgagAATCTTAACTTTACAAGTGTTGGCATCATGTCAGACAAAAGCGAGCTAAAAGCGGAACTTGAAAGGAAGAAGCAACGCCTGGCTCAGATCAGGGAGGAGAAAAAAAGGAAGGAAGATGAGCGCAAAAAGAAAGAGGCTGACTCGAAGAAAGATGCAGCCCCAATGGATGACTCCGACTTGGAGAAAAAGAGACGTGAGACAGATGCCCTTCTGCAGAGCATGGGCATCACGTCAGCTGATGTTCCTGTTGTCCCTCCTCCCATGTCTCCAACCTGCAAATCCGTGGGCACACCAAGCGAGGCAGGGAGCCAAGACTCGGGCGACGGCGCCGTGGGACCCAGGACTCTCCACTGGGACTCTGACCCGTCCACTCTTCAGCTTCACTCTGACTCTGAGCTGCGGCGGGGACCTCTGAAGATGGGCATGGCCAAGATCACCCATGTTGACTTCCCTCCAAAAGAGACTGTGTCGTACACCAAGGAGACCCAGACACCTGTGATAACCCAGCAGAAAGAAGaggaagaagaagaggaggaggaagttgCTCCACCACAACGAGTGCTTGAGGCCCAAACAGAGAAACCTGTCCAGAAAGAGGATGAGGAAGCACCTCCGCAAGAGCTGACCGAGGAGGAGAAGCTGCAGATCCTCCATTCTGAGCAGTTCATAACCTTCTTTGACCACAGCACCCGCATCGTGGAGCGGGCCCTGTCTGAACATGTGGACGTCTTCTTCGACTACAGTGGTCGcgagatggaggagaaggagggTGAGATCCAGGCAGGGGCCAAGCTGtttctgaacaggcagtttatGGACGAGCGCTGGTCCAAGCACCGTGTGGTCACCTGTCTTGACTGGTCCGCTCAGTATCCTGAGCTGCTGGTTGCCTCATACAACAACAACGAGGAAGCCCCCCACGAGCCGGACGGGGTGGCCCTGGTCTGGAACATGAAGTACAAGAAGAACACGCCGGAGTACGTCTTCCACTGCCAGtctgCAGTGATGTCGGCCGCCTTTGCCAAGTTCCACCCTAACCTGGTGGTGGGGGGCACCTACTCAGGGCAGATCGTTCTGTGGGACAACCGGAGCAACAAGAGGACCCCTGTACAGAGGACCCCCCTGTCGGCCGCAGCACACACGcACCCAGTGTACTGTGTGAACGTGCTGGGCACCCAGAACGCCAACAACCTCATCAGCATCTCTACCGACGGCAAGATGTGTTCCTGGAGCCTGGACATGCTGTCTCAGCCGCAGGACAGCCTGGAGCTGGTGTTGAAGCAGTCGAAGGCCGTCGCTGTCACCTCCATGTCGTTCCCCCTTGGGGATGTCAACAACTTTGCGGTGGGGAGCGAGGATGGTTCCGTCTACATGGCGTGTCGTCATGGAAGTAAAGCAGGGATCAGTGAGATGTTTGAGGGCCACCACGGGCCTATCACAGGGATAGACTGTCACACAGCGACCGGGCCCGTCGACTTCTCCCACCTGTTTGTCACCTCCTCCTTCGACTGGACCGTCAAGCTGTGGAGCACTAAGAACAACAAGCCGCTGTACTCGTTCGAGGACAACTCGGATTACGTCTACGACGTCATGTGGTCTCCCACTCACCCGGCGCTGTTTGCGTGTGTGGATGGAGTGGGCCATCTTGACCTGTGGAACCTCAACAACGACACTGAGGTTCCTACAGCCAGTACCACAGTGGAGGGGAACCCAGCCCTGAACCGCGTGCGATGGGCCCATTCCGGCAAAGAGATTGCCGTGGGAGACTCTGATGGACAGATTCTGGTCTATGATGTTGGAGAGCAAATCGCCGTTCCACGCAACGACGAGTGGACCCGTTTCGTCCGAACCCTGGCGGAGATCAACGAGAACCGGGACGACGCAGAGGAGCTGGCCGCTCAGCGCCTCTCTGCCTGATCGTCATGGAAACTCCAGTCTAGGGACCAGCAAAAGGCTTCATATTGTCAGCCTTGTTTTGATTGGAGGAAAAGACGCGATTTGCGACAGTGTTCAGGCGTGTGGACATCTTTTCTTTGGAAACATTGTAGTCAGATTTAATACACATAGCTACTTAACTGGGATAGCCTTCTACTTCGGCTGGTTTAAGTACACCAGTCTCCAATGGGATAACTAACAGGGCTATCTATCAACCTCAGACACTACAAGAAACAAAGCCATCTTCTTACTCTGCAATACAAATCAGTTGAACTCTTTTTCAACGACTCAAAAACCAGAATGCCTTAAAGGTACCATGTCTGAATCCATACGGTAGTGTTGTGGGTTTAGCTTCAGTTTCACAGGCCACTCAACTTGTTTGTGGTTACACCACCTTGAGCATGTGTTTGCTGTCCTCATGATTGCTGTTCACCATCTGTGCTTCGATGCCCGTGTCCACTTCAACTGCAGTAGACCCATCACTACACACAGGAATGTAGTGGTCTCATCATACATCAGCCAGTGTTTTTCTATGTTCCTTTAACCTAGATGCACAAGATCTCCACTTGTTTTTGTAATATATGGACAATTGTAACCTTCAACTTGACTATTGCTCTTAAACTAAATTTGACACTTAAGATATCAGAACCAGAATCTTTAGAAGTTTGAGGGAGAACTACCTGAAGATATTATGCTGTATTGGAAAATTGCTTAATGTGTAGTATGAATTCAGTATCCATACTTTATGGCGCGTCTAAGCAAAAGTGTAACTTTTTGTGACCTAGATATTACAGAGAATGTCTTCCACGAATCTCAATGTACTTTTTTCACAATTAAAATTAAGCCATTTTGATTTATTTCAACAAAATACAATAGATACATTTAAATGATTTTCCAAAACCCTGGTCATGATTTCAAAATAAATACTTTCGAAAA

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component

KEGG:

id description
K10415 DYNC1I, DNCI; dynein intermediate chain, cytosolic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303643 lncRNA upstream 67544 49301268 ~ 49301555 (+) True G267235
TU303503 lncRNA upstream 83996 49283571 ~ 49285103 (+) True G267099
TU303625 lncRNA upstream 114885 49253953 ~ 49254214 (+) True G267217
TU303622 lncRNA upstream 117967 49250783 ~ 49251132 (+) True G267214
TU303623 lncRNA upstream 119485 49249433 ~ 49249614 (+) True G267215
TU303728 lncRNA downstream 56930 49447525 ~ 49447786 (+) True G267308
TU303729 lncRNA downstream 57953 49448548 ~ 49448806 (+) True G267309
TU303735 lncRNA downstream 63133 49453728 ~ 49453950 (+) True G267315
TU303744 lncRNA downstream 75278 49465873 ~ 49466114 (+) True G267324
TU303767 lncRNA downstream 105002 49495597 ~ 49495810 (+) True G267347
XM_021597156.2 mRNA upstream 758 49365942 ~ 49368341 (+) True LOC110520104
XM_021597155.2 mRNA upstream 4281 49357526 ~ 49364818 (+) True dcaf17
XM_036974407.1 mRNA upstream 68323 49296162 ~ 49300776 (+) True LOC110520099
XM_021597140.2 mRNA upstream 87135 49266948 ~ 49281964 (+) False gad1a
XM_036974420.1 mRNA downstream 22897 49413492 ~ 49430082 (+) False hat1
XM_021597158.2 mRNA downstream 25569 49416164 ~ 49430082 (+) False hat1
XM_036974419.1 mRNA downstream 25822 49416417 ~ 49430082 (+) True hat1
XM_021597160.2 mRNA downstream 74056 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA downstream 74056 49464651 ~ 49470746 (+) False dlx1a
TU300304 other upstream 2536855 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2536895 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2536965 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3184295 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 3289674 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 120208 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 163903 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 446022 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 771706 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1211707 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile