RNA id: TU311250


Basic Information

Item Value
RNA id TU311250
length 2012
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110520207
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54181672 ~ 54191829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGGTTATGTGAGGCGCATTCCGGTCACGAAGGTAAAATGATGGCAATGATTTGAGGtaacggacagagagagggatgaggaatattTGTGCGTGAAGTGGTTGCTGGAGCGTTATTTCACGGCAACGGATATCAAATAATATTGaTCACGTACATTGAGACAAGTGCCAAGGATCCCCCTATGAATGTGGACAAGGCGTTTCATGAACTAGTCAGGGTTATAAGCAGATCCCAGAGAGGAgcctgaagaagaagaagaagatgaagtgGCGAGGAGAACGATCTACGGGTTCTCACAAAGTCCACTGTGTCATCTTGTGATGGTGTCGCCGCTGCTAGCAATGATATTAGAGAGAACTGCGGACTGGCAGTAACCAACAACTGGAGGGGGAATTGGGGGAGATAAGGAACTGACTGTTGACTGTTACGGTGTCAAAGAAAATCCCTCACTCCAAGGCATGGCCAAGTGGGGTCTTACAGGGGCATCATTGTCTGCCCGCTTCCCCTGATTGGTCAGAAAAAAGCACTCCCGGAAGAGCTCCTTATGAACTGACTGATTTCCAGACAGTGCAGTGATGATGCTCTCCATGGAAGTAGAGGTGGACATCAAGGTATTCTCCTGGGTGGGGAGATGTGACGTTAGATGTTGTTAGGGACCTATGATCTGAGTGTTTGTGTTGTGGTTGTAAGTTctccatggtgttgaatgttaAATTCTGAAATGATAAAGAGGATGATTATGAAGTATATTCTATCTGCACTAGCCACAGGCATAAGAGGATTTGGCTTTGGGGTCCTGAAGAGAAGTGGGAGGATGTGGCTGTTAGTACTTTTTATTAAATTTTTTCTGGTGGGGAATCTGGCTTGAGGGGATCAGTTACTCCAAGCAACAATATGTTAGAGTTCTCTGTCTGATAGGGAGTATTTAATACCTAATGAAATGGCTTGTACTGTTAAAGCACTAAACAAAAAAAACTTTGGGGCTTGTTCATCTGGGGTGTATTCATAACGCCAATTCTGTTGCAAACTCCAAACGGAAAACCTTTGCACGAAAACTAGactttctattggacaaattcaggtaggtccctccctgttTTGTTCAGTTTGCTTGTTTTGGTTCTTAAATGGTAAATGATttccattgaaaaatgtaatgaatacacccctggttaGAAATTTGCCCTTGAATGAAGGAAGTACCTTTGCACTTTGAATAGATTTTGACTTTCATATCTGCATGTGTGGAAAAATTGCAATGATGAAAGGGAAGACATTATAGAAATTGACTCAATGTGGAAAAACTGAGCTTAACATAATTATGTCAATACCATGTAGCTCATTTGCTTGTCTCATGTCGGTTGGACAGAACAGtttataccagtggaggctgctgaggggaggacggctcataataatggctggaacgatgcatatggaatggcatcaaacacactGAAACCATGTATTTAATACTatgccgttccagccattacaacatgcctgttctccccaattaagttgcCACCAACCTCTTGTGTTTTATGCTCTCAgccctgggttgtgttcagtagggcacactgtAGAAAAACAGTTTGCAATGGAAAACTAAAATTGACATTTCTTATTGAAGTCCAAGTAATCAATCCACGTTTCAGTACATTTTCATCTGGTACCTACTGAACATAATCCTGGAGTGATCCTGCTGTACTTCACCCAGAGGTACAGTGAAAGTTCTACTTCCCAGGGTATGAAGCAACAGACATGGTGTCTTTGGCAgtattttacaaaaaaaaagagGTCTGAAGAAATCAATGATATTGTATCAAGTATGTTTGATACTTTTTTATTATTGATCTGAATTTCTtgtgttttttaaaataattaaTAATTTATTACTGTACCTGTTACCTCAACATGATGTATTATAACTGGCTGTGTCTGACTGAGCTAGAGGAAGATGAGGCACAAAACAATGGCCACTGCCTTTCTTTCTAGCTTCCTTCAGGGT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310843 lncRNA downstream 9298 54172998 ~ 54173256 (-) True G273798
TU310839 lncRNA downstream 13168 54169182 ~ 54169386 (-) True G273794
TU310835 lncRNA downstream 16580 54165442 ~ 54165974 (-) True G273790
TU310815 lncRNA downstream 35722 54146010 ~ 54146832 (-) True G273770
TU310797 lncRNA downstream 70299 54112052 ~ 54112255 (-) True G273752
TU311321 lncRNA upstream 89929 54281582 ~ 54289271 (-) True G274198
TU311333 lncRNA upstream 123676 54315329 ~ 54317786 (-) True G274208
TU311571 lncRNA upstream 415514 54607167 ~ 54607372 (-) True G274412
TU311488 lncRNA upstream 477709 54669362 ~ 54678112 (-) True G274339
TU311690 lncRNA upstream 617166 54808819 ~ 54809081 (-) True G274531
XR_002472957.2 mRNA downstream 288766 53887126 ~ 53893788 (-) True LOC110520203
XM_021597355.2 mRNA downstream 288768 53883698 ~ 53893786 (-) False LOC110520203
XM_021597349.2 mRNA downstream 317569 53817111 ~ 53864985 (-) True rab3gap1
XM_036974578.1 mRNA downstream 435685 53671765 ~ 53746869 (-) True LOC110520198
NM_001160552.1 mRNA downstream 518576 53661100 ~ 53663978 (-) True ubxd2
XR_002472958.2 mRNA upstream 233905 54425558 ~ 54429214 (-) True LOC110520212
XM_036974604.1 mRNA upstream 312411 54504064 ~ 54594080 (-) True LOC110520213
XM_021597379.2 mRNA upstream 425875 54617528 ~ 54624544 (-) True LOC110520216
XR_002472959.2 mRNA upstream 442085 54633738 ~ 54636478 (-) True LOC110520218
XM_021597375.2 mRNA upstream 447577 54639230 ~ 54646342 (-) True LOC110520214
TU309646 other downstream 931470 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1473738 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 2582324 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 2582656 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 2708415 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 488265 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 911841 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 1218490 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 1218490 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 3079129 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile