RNA id: XM_036974660.1


Basic Information

Item Value
RNA id XM_036974660.1
length 7171
RNA type mRNA
GC content 0.54
exon number 43
gene id LOC110520241
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55890382 ~ 55923883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGTAATCACAACGCTGTAGtggaaaccaagactgttctcaGGGCGGGTCTGCCGGTTTTGACCTAGCAGAAGTTACTTTTCGTGGCAGGTTATGATAATTCGATCAAGTTTAGGAAAATGGTTACGGTTAGATAAAATGCAAAAACacacaacatactgtatctagCTACAACCAGGTCTGCCCTGAGAACACTCTTGGTTTCTACTAATGCGATCACAACAGTTGATCGAACTGTTGTGGTCACGACTTGTCCTGTCTTGCTCAGGACTAGTCTGACTGCTTGAAATACATATCTCAAGATAGGGCGGCTACTCGACTTCACAGGAATTTACCTAATGTAATTTATTCATACAGGGATGTCCAAGGAGACCAACACACAGGAGCAGTAACATGGCTGCTGACGACaaatcctcctcctcatcctctacgCTGGATTGGAGTGTGGCGCCTCCTATTTCCCCTGGCAGCCCATCTCACCTGACACACTTCAAACCCCTGACTCCAGAGCAGGACGAGCCCCCGCTCCGATCAGCATACAGCTCCTTTGTCAACCTGTTCCGCTTTAACAAAGAGGAGGGGCGGCCACCCTCAGTGACAGAGAAACCGGATGTGGTTGTGGCGTCACCCACTGGGGAGCGTAGGAACTGGACCATACCAGCACACTCAATCCACGGCTCTGGGGCGCATAGGAAACAACACCACGATCTTTTACGCAGGACTTCTACTGCTtcagAGGGCCGTAGGAAATCGGAAACCCCCCTGGGCACTCACGATCCTCGTACGGCTGTTCAGCTCCGCACTGCTCTGAAGAGACTCAAGGAGATCATGGAGGGAAAGAGCCAGGACAGTGACCTGAAGCAGTACTGGATGCCAGACAGCCAATGTAAGGAGTGCTACGACTGCAATGAGAAGTTCACCACCTTCCGCCGCCGCCACCACTGCCGGCTCTGTGGCCAGATCTTCTGCAGCCGCTGCTGCAACCAGGAAATCCCTGGCAAGTTCATGGGCTACACGGgagacCTGCGGGCCTGCACCTACTGCCGTAAGATTGCTCTGAGCTACTCCCACTCTGCAGACTCTGGCTCCATAGGGGAGGACCTGTCTGCTCTGTCTGACTCCTCACCCTGCTCCACCTGCGTCCTGGAGCCCAGTGAGCCTCGCACCCCGGTCGGTGGACGGAAGGCCAGCCGCAACATCTTCCTGGAGGAGGACCTGGCCTGGCAGAGttTGATTCACCAGGACTCTCAGAACAGTGGCATGAATTCTAGACGGAGCACGCTACAAGAGGATGGAGGCAAGTCCCCAATAAGGAAGCGGTCAGCCAGTGTGACCAACCTGTCCCTGGACCGGTCTGGCTCCTCCATGGTGCCCTCCTATGACAGCTCAGTGAGCCCCCAGACCAGCAGGGCCATGCCAAAACCTGACCACagcgaagaggagaggaagatacTGTTGGACTCATCCCAGCTCAAAGACCTGTGGAAGAAGATTTGTCACAACACTACTGGTATGGAGTTCCAGGACCACCGCTACTGGCTCCGTACATACCCCAACTGCATTGTGGGGAAGGAGTTGGTCAACTGGCTGTTAAGGAATGGAACTATCTCCACAAGGGCACAGGCGATAGCCATTGGTCAGGCTCTGGTAGATGGTCGTTGGTTGGACTGTGTCACTCACCACGACCAGCTGTTCAGAGATGAGTACGCTCTCTATCGCCCCCTACAGAGCACAGACTTCTCTGAGACCCCGTCTCCTGACAGTGACAGTGTCAACTCTCTGGAGGGACACTCAGAACCTTCCTGGTTTAAAGACATCAAGTTTGACGACAGTGACACAGACCAGGTGGCTGACGAGAATGACTATGTCATGCCCAATTCGTCCAGTCCTAGTAAGAGGACGTCAGTCAGCAGTTTCCAGTCAGCGGTGGACAGTGACTCTGCTGCCTCCATCAATCTCAATATGGAGCAGGACAATGTCAACTTCCACATCAAGAAACAGTCCAAGTACCCCCATGTACCCCCGCACCCTACGGAGCAGAAAGAGTACCTGGTCTCAGAGGAAGGAGGACAGAATATCTCCATTAGCGACGCTTTCATCAAAGagTCCCTGTTTAACCGTCGTGTGGAGGAGAAGCCTAAAGAGATGCTGTTCACTCCTCTGGGCTGGCACCACAGCTCCCTGGACCAGCtcagagaggagaatggagagaaGAAGGCCATGGAGAGGCTACTCTCTGCCAACCACAGTCACATGATGGCGCTGTTGCAGCAGCTGCTGTACAGTgagtccctgtccctctcctggcGTGACATCATTGTTCCCGTGGTGAGGCAAGTGGTGCAGACGGTGCGGCCAGACGTTCGCAGCTGTGATGATGACATGGACATCAGACAACTGGTCCACATCAAGAAGattCCTGGAGGGAAGAAGTTTGACTCTGCCGTAGTGAATGGCTTTGTCTGTACCAAGAACATTGCCCACAAAAAGATGAACTCGTACATCAAGAACCCCAAGATCCTGCTGCTGAAGTGTTCCATAGAGTATCTCTATAGAGAGGAGACCAAATTCACCTGCATTGACCCCATTGTGCTTCAGGAGCGTGAGTTTCTGAAGAACTATGTTCAGCGTATAGCGGACGTGCGTCCCAACCTGGTGCTGGTAGAGAAGACTGTGTCTCGTATCGCTCAGGACATGCTGCTGGAGCACGGGATCACATTGGTCATCAACGTCAAACCACAAGTCTTGGACAGGGTGAGTCGTATGACCCAGGGGGACCTAGTCATGTCCATGGACCAGCTGCTCACCAAGCCTCGACTGGGAACCTGCCAAAAGTTCTACCTACACTCTTTCCAGCTGGCCAATAATGAGTTGAAGACTCTCATGTTCTTTGAGGGCTGCTCTCCCCAGCTGGGCTGTACCATAAAGCTTCGCGGGGCATCTGAGTATGAGCTGGCCAGGGTTAAAGAGATCATCATCCTCATGgtgtgtgtggcctaccactcccAGCTAGAGATATCCTTCCTCATGGATGAGTTTGCCATGCCTCCCAGCCTGGCCAAGACCAACTCCTTCCCCTGTCTCCTGGAGAGCACTactgttgaggaggaggaggaggagagccagGAAAATGGGACCGACCAGAGCACCCTCTCGCAGGGAGGAGAGACTgtgctgggggaggaggaggagaagtctTCCCTTGGGAAATCTGTATCAGAGTCATCCTCGCCTAAAGATGTCCATGGTGCAAAAGTCAACAAAAAACACTTcctgtcctcttcttcctccttggGGGCTGAGGGGGTGGAGTCAGCAGAGGTCATGACCTCCACGCCGTTGTCCAATCGCCAGGTGCTGCCACCTCCAGTGTCCCCACCCTATCTTATTGATGACCTGGAGGAGTTGGTAGATGAGATTGGGTTGGGGAAGGGGGAGACTGAGGGGGGGAGCGGGTCGGGGGTTCTGGGGAGGGGTGAGTCGCGGGAGGAGAGCTCGGGTTCAGAGACGCCCCCCAGGCTGTTCAGAGACCCCCTTCAGGATGACACAGGGCTGTTTGTCacagagcagGTGGCCTCAACGGACGACCGTCTCAAGACGCTTACGGCAGGCTTCAAACAGGAGCTGAAGGACATCATCCTTTGTATCTCCCCCTTTATCACCTTTAGAGAGCCCTTCCTCCTCACGCCTGCTGGCCTACGCTGCCCCAGCAGAGACTACTTTCCTGAAAAGGTGTACCTCTCTCCGCTGCTCAACAAGGACTTCAAAGAACTGGACTGTCGACGTAAGCGACAACTCCTCAAAGATTCCGCTCCGTCAGGTGGAGGCATCGCCAACGGAGTCCCTCCCCCCCGCCCCTTCCAGGTGTTACCCTCCCACCACCTTACCAGCGCCCGCATCGCAGAGCAGCTGGGCAGCAGCCAGGACCTGGCCAAGATGCTGGCAGACTACCGTGCCCAGGGGGGCCGCCTCCGGCAGGAGGCAGACCCCTTCACCCAGCCCCTGCCTCAGCCACCAGTCCGGGAGGCTCCACCGCCCAAGCACCCCGTCAAGGCTGATAGTGAGGAAGAGAAACCAGCAGGACAGAACGACATGACCTGGGCCTCCAAGCTGGACTGCCTGAACCCGGTGAACCACCAGAGACTGTGTGTTCTGTTCAGCAGCTCCTCAGCCCAGTCCAACAACTCCCCCAACCCCTGCGTCAGTCCCTGGATTGTCACGATGGAGTTCTACGGAAAGAATGACCTCACACTAGGAATATTCTTGGAGAGATACTGTTTCAGGCCATCCTATCAGTGCCCTAGTATGTTCTGTGAGACTCCCATGGTGCACCATGTGCGGCGATTTGTCCATGGCAGTGGCTGTGTTCAGATCGTACTGAAGGAGCTGGACTCTCCTGTGCCTGGATACCAACACACCATCCTCAACTACTCCTGGTGCCGCATATGCAAACAGGTGACTCCTGTGGTGCCCCTGTCCAATGACTCGTGGTCCATGTCCTTTGCTAAGTACCTGGAGCTGAGGTTCTATGGTCACCAGTATACCAGGAGGGCTAATGCTGAGCCCTGTGGCCACTCCATCCACAAAGACTACCACCAGTACTTCTCCTACAACCAGATGGTGGCCTCATTCAGCTACATCTCAGTGAGACTGCTGGAGATCTGCCTCCCTCCTCCTAAGATCTTCATCAGGAACCAGGGGCCCTCCAAGGCAAGCATGCAGCAGGACCTCAAGGACTTCTCACAGAAGGTGAATCAGGTGTACCTGGCCATAGAGGACCGCCTCACTTCCCTGAAGACGGACACCTTCAGCAAGACACGCGAAGAGAAGATGGAGGACCTGTTTGCACAGAAAGACatggAGGAGGCAGAGCTGCGTAGCTGGATAGAGAAGCTGCAGGCTCGTCTCCAGGCTTGTGGTAGTGACTCCCCCCAGCAGCTCCAGACTGTACTGGAATCAGTGGTAGTGAAGAAACAGAGCCTGTGTGAAACACTGCAGTCCTGGAACAGCAGGCTGCAGGACCTATTCCAGCAGGAGAAGGGCAGGAAGCGTCTGTCTGTCCCAGCCAGCCCTGGGAGACACAGACCGACAGACGACAGCAAGACCAGTGTTCTGGAGTCTTCTCCACGCAACCCCTCCCCTGTGGTACAAAATGGTGACAAAGAGGACCGTCACCTCACTACCCTGCCCTCGAGCTCGGGGTCGTCATTGCTAACGTTACCGTCACCAGGGGAACCAGGCTCAGAACCCCTCTCGTCTGGACCATCCTTTCCTGACCAGGACTCTGTCAGCATCCCAgaggATGTGTTTGATGGACACCTGTTGGGCTCCAATGACAGCCAGGTGAAAGAGAAGTCCACTATGAAGGCCATTCTAGCCAACTTGCTGCCAGGCAACAGTTACAACCCCATCCCATTCCCATTTGACCCAGACAAGCATTACCTGATGTATGAGCATGAGAGAGTGCCCATAgccgtgtgtgagagagaacccAGCTCCATCATTGCATTCGCTCTCAGCTGTAAGGAGTATAAGACCGCTCTGGATGAGCTGTCAAAGACAACGGTGAAGGCTGGAGGCGAGGACACCACCCAAACCATCAGCTCCGGAGAGAGCCGGGCCAAGAACAGCCCAGCCAAGCCCAATGAGACGGCCTCCTCCCAGATGGGTCCGGGCCGCAGCAGCATGGACGCTGACCCTCTCAAAGATGCAGACATAGGAGACAAGCACAAGAAGTCAGCCGGAAACCCTCATATCGAATTACAGTTCTCTGATGCCAATGCTAAGTTCTACTGCAGGATCTACTATGCAGAGGAGTTCCACAAGATGAGAGAGGAGATCATGGACAGTACGGAGGATGACTTTGTCCGCTCGCTCTCCCACTGCGTCAACTGGCAGGCCCGTGGCGGCAAGTCTGGGGCCGTCTTCTACGCCACCGAAGATGACCGGTTCATCCTGAAGCAGATGCCCAGACTAGAGGTTCAGTCCTTCCTGGACTTTGCCCCTCACTACTTCACCTACATCACCGGAGCTGTGCAGCAGAAGCGACCCACTGCCCTGGCTAAGATCCTGGGTGTGTACCGGATCGGCTACAAGAACTCCCAGAACAACTCAGAGAAGAAGCTGGATCTGCTGGTCATGGAGAACCTGTTCTATGGCAGGAAGATGGCCCAGGTGTTCGACCTCAAGGGTTCTCTGAGGAACCGCAACGTTAAGACAGACTCTGGGAAGGAGAGCTGTGAGGTGGTTCTGCTGGATGAGAACCTACTGAAGCTGGTCCATGACAACCCTCTGTACATCAGAGCCCACTGCAAGGCCATCCTGAGGGCGGCCATACACAGTGATGCCTACTTCCTGTCTAGTCACCTGATCATAGACTACTCTCTGCTGGTTGGACGAGATGACACCACAGACCAGCTGGTGGTGGGAATCATAGATTACATTCGGACATTCACATGGGATAAGAAGCTGGAGATGGTGGTGAAATCCACAGGGATCCTGGGAGGGCAAGGTAAGATGCCCACAGTGGTGTCTCCGGAGCTGTACCGATCGCGTTTCTGTGAGGCCATGGACAAATACTTCCTCATGGTGCCTGACCACTGGACAGGTCTAGGGGTCAACTGCTAACTGACACCAGGGAGCTAGCCTgagttccagatctgtttgtgtcgtCTAGCCAATTCCTTTGTCATTGTCACGGCATGTTTGGCAACACAGCATAAACGGATCTGGGACTCCGCTGCTAGCTGCAGAACACAACATGGGCATCAGTTACCAGGGGGGACAGGAGATTACAATGCAGAAAAACCCTTTGCCCAATAAGGAACCATAAAAGCATACTGGAAGGATTGATGAAGAGTAATGCAAGGCCAGTATACAACGACTCAATCATTCCATAGTATTATGatgatctactagactgtaaacgAGTGACTAGAGTATTATTGGAAGTCATGACTGTCCAGTAAAAGCTGGGCCCTAATTTATCCTGACATGGAAAGAACTTAATTCCCTAATCTTGACGTGTCAAACTGTTTCACGCGGGCAAAGTGAGATGgcactgaaaaaaaaaaatcttacttGGTGGTCCTAGTTTGGTGAACAAATGTGATGTAAATGTACAGAGAGTATGTAATTAAAGATTAACACTGATTTCACAAATGTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313819 lncRNA downstream 8824 55881007 ~ 55881558 (-) True G276421
TU313856 lncRNA downstream 122046 55766309 ~ 55768336 (-) False G276458
TU313857 lncRNA downstream 122046 55766309 ~ 55768336 (-) True G276458
TU313844 lncRNA downstream 150626 55739422 ~ 55739756 (-) True G276446
TU313843 lncRNA downstream 151794 55738370 ~ 55738588 (-) True G276445
TU313832 lncRNA upstream 9954 55933836 ~ 55934130 (-) True G276434
TU313818 lncRNA upstream 12735 55936617 ~ 55937022 (-) True G276420
TU313897 lncRNA upstream 19537 55943419 ~ 55944159 (-) True G276497
TU313919 lncRNA upstream 53578 55977460 ~ 55977673 (-) True G276518
TU314075 lncRNA upstream 256876 56180758 ~ 56181147 (-) True G276661
XM_036974651.1 mRNA downstream 69140 55779503 ~ 55821242 (-) False LOC110520238
XM_036974648.1 mRNA downstream 69172 55788401 ~ 55821210 (-) True LOC110520238
XM_021597406.2 mRNA downstream 98207 55788401 ~ 55792175 (-) False LOC110520238
XM_021597405.2 mRNA downstream 102263 55779503 ~ 55788119 (-) False LOC110520238
XM_036974642.1 mRNA downstream 174597 55592364 ~ 55715785 (-) True LOC110504309
XM_021597425.2 mRNA upstream 59991 55983873 ~ 55985472 (-) False LOC110520251
XM_036964471.1 mRNA upstream 59991 55983873 ~ 55985477 (-) True LOC110520251
XM_021597424.2 mRNA upstream 63221 55987103 ~ 55988048 (-) True LOC110520250
XM_021584491.2 mRNA upstream 73884 55997766 ~ 55999047 (-) False LOC110505323
XM_036964483.1 mRNA upstream 73886 55997768 ~ 55999561 (-) True LOC110505323
TU312498 other downstream 478895 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 478895 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 771170 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1207577 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2639298 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1346900 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1479102 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1660504 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6790693 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9045667 64969549 ~ 64970755 (-) True G286522

Expression Profile