Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029623 |
| length | 804 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_015041 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 45991054 ~ 46018152 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0003181 | atrioventricular valve morphogenesis | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0007033 | vacuole organization | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0009948 | anterior/posterior axis specification | biological_process |
| GO:0045602 | negative regulation of endothelial cell differentiation | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0001886 | endothelial cell morphogenesis | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0072554 | blood vessel lumenization | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-555 | Acts upstream of or within several processes, including circulatory system development; endothelial cell morphogenesis; and negative regulation of endothelial cell differentiation. Predicted to be located in several cellular components, including cell junction; cytoplasm; and cytoskeleton. Predicted to be active in plasma membrane. Is expressed in head; notochord; post-vent region; posterior cardinal vein; and ventricular zone. Used to study cerebral cavernous malformation 1. Human ortholog(s) of this gene implicated in cerebral cavernous malformation and cerebral cavernous malformation 1. Orthologous to human KRIT1 (KRIT1 ankyrin repeat containing). |
| ensembl_id | ENSDART00000162723 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029619 | lncRNA | downstream | 33741 | 45943054 ~ 45960155 (-) | False | XLOC_015039 |
| TCONS_00029799 | lncRNA | downstream | 303481 | 45689237 ~ 45690415 (-) | True | XLOC_015038 |
| TCONS_00029614 | lncRNA | downstream | 749188 | 45157502 ~ 45244708 (-) | False | XLOC_015036 |
| TCONS_00029615 | lncRNA | downstream | 749188 | 45244185 ~ 45244708 (-) | True | XLOC_015036 |
| TCONS_00030345 | lncRNA | downstream | 986839 | 45003801 ~ 45007057 (-) | True | XLOC_015035 |
| TCONS_00029626 | lncRNA | upstream | 20654 | 46019877 ~ 46022808 (-) | False | XLOC_015042 |
| TCONS_00030346 | lncRNA | upstream | 413390 | 46412613 ~ 46420558 (-) | False | XLOC_015045 |
| TCONS_00029633 | lncRNA | upstream | 417583 | 46416806 ~ 46419781 (-) | True | XLOC_015045 |
| TCONS_00030347 | lncRNA | upstream | 492360 | 46491583 ~ 46492033 (-) | True | XLOC_015047 |
| TCONS_00030348 | lncRNA | upstream | 725636 | 46724859 ~ 46764361 (-) | False | XLOC_015048 |
| TCONS_00029621 | mRNA | downstream | 7907 | 45983647 ~ 45985989 (-) | True | XLOC_015040 |
| TCONS_00029618 | mRNA | downstream | 33705 | 45856171 ~ 45960191 (-) | False | XLOC_015039 |
| TCONS_00029617 | mRNA | downstream | 342902 | 45375669 ~ 45650994 (-) | True | XLOC_015037 |
| TCONS_00029616 | mRNA | downstream | 459504 | 45375669 ~ 45534392 (-) | False | XLOC_015037 |
| TCONS_00029613 | mRNA | downstream | 1038186 | 44725691 ~ 44955710 (-) | True | XLOC_015034 |
| TCONS_00029624 | mRNA | upstream | 20090 | 46019313 ~ 46058963 (-) | False | XLOC_015042 |
| TCONS_00029627 | mRNA | upstream | 25939 | 46025162 ~ 46032556 (-) | False | XLOC_015042 |
| TCONS_00029628 | mRNA | upstream | 36395 | 46035618 ~ 46037835 (-) | True | XLOC_015042 |
| TCONS_00029629 | mRNA | upstream | 67666 | 46066889 ~ 46088429 (-) | False | XLOC_015043 |
| TCONS_00029630 | mRNA | upstream | 68304 | 46067527 ~ 46091497 (-) | False | XLOC_015043 |
| TCONS_00029620 | other | downstream | 33713 | 45955079 ~ 45960183 (-) | True | XLOC_015039 |
| TCONS_00029605 | other | downstream | 1931347 | 44049647 ~ 44062549 (-) | False | XLOC_015032 |
| TCONS_00029608 | other | downstream | 1931364 | 44058992 ~ 44062532 (-) | False | XLOC_015032 |
| TCONS_00029587 | other | downstream | 2963008 | 43029382 ~ 43030888 (-) | True | XLOC_015020 |
| TCONS_00029580 | other | downstream | 3315416 | 42678364 ~ 42678480 (-) | True | XLOC_015013 |
| TCONS_00029625 | other | upstream | 20654 | 46019877 ~ 46022879 (-) | False | XLOC_015042 |
| TCONS_00029642 | other | upstream | 1400966 | 47400189 ~ 47400307 (-) | True | XLOC_015054 |
| TCONS_00029643 | other | upstream | 1416367 | 47415590 ~ 47416405 (-) | True | XLOC_015055 |
| TCONS_00029659 | other | upstream | 1568490 | 47567713 ~ 47567848 (-) | True | XLOC_015061 |
