RNA id: TCONS_00029629


Basic Information

Item Value
RNA id TCONS_00029629
length 1854
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_015043
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46066889 ~ 46091605 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACGATGGAGACTCTGATAAGAACCTGCGTGTGGGCTTGCTGCTGGTCGTCTCTTTCTTTCTTGTTATCAGCGTTCTTGCCTTTCCCAACGGTCCTTTCACGCGTCCTCATCCCTCTGTATGGCGCATGGTGTTTGGTCTCAGCGTGCTTTATTTCCTCTTTCTGGTGTTCCTGATCTTCCTGAACTGGGATCAGGTGAAGGCGCTGTTGTATTGGCTCGACCCAAATCTGCGTTACGCCAAACGAGAAGCAGATGTGATGGAGTATGCAGTAAACTGTCATGTCATCACCTGGGAGCGGATCCTGAGTCATTTTGACATCTTCGCCCTGGGTCATTTTTGGGGTTGGGCTATGAAAGCTCTGCTCATCCGCAGCTACGGACTCTGCTGGACCATCAGCATCACATGGGAGCTCACCGAGCTGTTCTTCATGCACCTCCTGCCAAACTTTGCGGAGTGCTGGTGGGATCAGGTCATTCTCGATATCCTGTTGTGCAACGGTGGAGGGATTTGGCTTGGCATGACTGTGTGCCGCTTTCTGGAGATGCGCACCTACCGATGGGCCAGTATCAAggataTCCACAGCACCTCGGGAAAGCTGAAGCGGGCCGTTCTTCAGTTCACTCCGGCCAGCTGGACGTATGTGCGCTGGTTCGACCCCAAATCCTCCTTCCAGAGGGTGGCTGGAATCTACCTCTTCATGATAGTATGGCAGCTCACAGAGTTGAACACCTTTTTCCTGAAGCACATCTTCGTGTTTCAGGCCTCTCATCCTCTCAGCTGGTGCCGGATCCTCTTCATTGGGATCATCACTGCTCCTACAGTGCGGCAGTACTACGCTTATGTGACAGACACACAGTGCAAAAGAGTTGGAACACAGTGTTGGGTGTTTGGGGCCATTGCTTTCCTGGAGGCTCTGGCTTGCATCAAATTCGGACATGATTTGTTCTCTAACACACAAGCTCTGTATGTTGTCTTTTGGCTTTTGTGTCTGGCGTTCATTACATTTCTCTGTCTGTATGGGATGGTTTGGTACGAGCAAAATTATGGGAAGAAACTGAAGAGAATTCCAGATGACGACGGCACTTCTACTGACCCGTATGACAGTCTTCCTGAAGCTGCAAAAGAGAGGAGCTCCAGTAGCAACTCCAGCTCATCACGTAGAAGAAAAGGAGGAAAACACAAAACCGCCAATGGAACCAGTGGCAAGAAGTGAGCAGAAATGAACCCTGATGATCTGTGGATGGACTCGAGTATGAAGGAAACACACAGTAGAGAAGTGAAGAGAAGCGTAGAGAACATTTGAAGTAAagcacagacacagacacacttcCGTACACGGAGACTCAATGCACACCACTGCCTCTGTCTTTACAAAGCACTACCGCTGCATTTAAAGCTTTCCTACTCAGATTATGTCTCTTTTctaatctaaatatctaaaatgtctcaaatcaagaagcatttttcagACAAGTAaaacacattgtcttgttttaagatataataagccaaaatgaagtgagtttttccttaaaacaagcaaaataatcttgtcttttgttttgaaatgcttgttttaaggaaaaactcaattcATTTTGACTCACAAGACAATAATTTTGCTTGTCCAGAAATtcctcttgatttaagaatgttttgatatttggactagaaacaagaccaaaagaTCTCAGTAAGAAAAGCTTGTTTTGCCCTACAGTGCACTCGATTTATTCAAGAGCACTTGGAAGGAAACATAGTTGTGTTGTGCAGATGACTGTAAATGATGCACACTTAAAGGGATAAGTCCCTCATAATTAAAATACTCTAATGATTTATAATCACCCTCAA

Function

GO:

id name namespace
GO:0006659 phosphatidylserine biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-18 Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Orthologous to human PTDSS1 (phosphatidylserine synthase 1).

Ensembl:

ensembl_id ENSDART00000161385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029626 lncRNA downstream 44081 46019877 ~ 46022808 (-) False XLOC_015042
TCONS_00029623 lncRNA downstream 67666 45993896 ~ 45999223 (-) True XLOC_015041
TCONS_00029619 lncRNA downstream 106734 45943054 ~ 45960155 (-) False XLOC_015039
TCONS_00029799 lncRNA downstream 376474 45689237 ~ 45690415 (-) True XLOC_015038
TCONS_00029615 lncRNA downstream 822181 45244185 ~ 45244708 (-) True XLOC_015036
TCONS_00030346 lncRNA upstream 324184 46412613 ~ 46420558 (-) False XLOC_015045
TCONS_00029633 lncRNA upstream 328377 46416806 ~ 46419781 (-) True XLOC_015045
TCONS_00030347 lncRNA upstream 403154 46491583 ~ 46492033 (-) True XLOC_015047
TCONS_00030348 lncRNA upstream 636430 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA upstream 648689 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00029624 mRNA downstream 7926 46019313 ~ 46058963 (-) False XLOC_015042
TCONS_00029628 mRNA downstream 29054 46035618 ~ 46037835 (-) True XLOC_015042
TCONS_00029627 mRNA downstream 34333 46025162 ~ 46032556 (-) False XLOC_015042
TCONS_00029622 mRNA downstream 48737 45991054 ~ 46018152 (-) False XLOC_015041
TCONS_00029621 mRNA downstream 80900 45983647 ~ 45985989 (-) True XLOC_015040
TCONS_00029631 mRNA upstream 2889 46091318 ~ 46091605 (-) True XLOC_015043
TCONS_00029632 mRNA upstream 129670 46218099 ~ 46219035 (-) True XLOC_015044
TCONS_00029634 mRNA upstream 332920 46421349 ~ 46566430 (-) True XLOC_015046
TCONS_00029635 mRNA upstream 635782 46724211 ~ 46737822 (-) False XLOC_015048
TCONS_00029636 mRNA upstream 679837 46768266 ~ 46775562 (-) False XLOC_015049
TCONS_00029625 other downstream 44010 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 106706 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 2004340 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 2004357 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 3036001 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 1311760 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 1327161 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 1479284 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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