RNA id: TCONS_00029634


Basic Information

Item Value
RNA id TCONS_00029634
length 2972
RNA type mRNA
GC content 0.53
exon number 11
gene id XLOC_015046
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46421349 ~ 46566430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTAACGACTTTCCATCGGGACTCTCCGCCAGATGAACTCCATGAGTCCCGACGCGTTCATCTAACGTTAGCGAGTGTCCTGTCAACAAACCGGCTAGTTCGACCACTCCAACTAACAACCGTTAAAAACCCGGCTCGACCACCCACAACTACGAgattgtgtgtgcgcgcgtttgtGATGATCCTAACAGGGACGGTTACCGCTGAAATGGTGCTACCCGACAGACGAGGGAGATCGGTGTAAAATCGCCCACATGTACTGGATCAATCGCTTGCTGGTAGCTGATCGGAATCCGAAGCGGGAAGAAGAAGACGTGAGTTGTAAATCCTCGCAGGCTGGAAGATGGCGGAGCAGCACCATAGCTGGAGGAGGTGGTGGTGTTGAGGGACAAACTTCCAAACGCTTGAGATTTATTTCCAAACAGCGCGATCTGGCCTTCAGGACACATGCAGGCCAAAAAACGATATCTGATCTCGCTCTTGACTGGCGCCTTTCTAGTTCTGCTCATTTACTTGGGAGGAGGAGGGGTCCCGGGTCCCGCGGCCCCGGGCTCCAGGAGCCGGACACATGGATACAACCGGCCCGATCAGCCGTGGCCACACTTCTCGGACCCCTTACTACACTTCAGCCCGTGGGACCACTCGGACACGGAGGACTATAACGTGCACATATCGCCCAGGCAGAAGAGAGATGTGAACTCCAGCGTGTATAAGGGTAAGCGGTGCCGCATGCAATCCTGCTTTGAtttctcgctctgccaacggaaCGGCTTCAAAGTCTACGTGTATCCGCAGCAGAAGGGGGAGAAGATATCGGAAAGTTACCAGAACATCTTATCCACCATCGAGGGCTCTAGATTTTACACCTCTGACCCTGGtcaggcgtgcgtgtttgtgcTGAGCTTGGACACTCTCGACCGAGACCAGTTGTCTCCGCAGTATGTGCACAATCTCAAAACTAAAGTGCAGAGCTTGGCTCTGTGGAACAACGGTAGGAATCACctcatatttaatttgtattctgGCACATGGCCTGATTACACGGAAGATTTGGGCTTTGACATTGGTCAGGCCATGCTGGCCAAAGCTAGCATCAGCACCGAGAACTTCAGACCCAACTTTGACATCTCCATCCCCTTGTTCTCCAAGGAGCACCCGAGGACCGGCGGGGACAGGGGCTACTTGAAATACAACACCATTCCACCTTTTAGAAAGTATATGTTGGTATTTAAGGGCAAGCGCTATTTGACAGGCATCGGCTCGGACACGAGGAATGCTTTATATCACGTTCATAACGCGGAGGATGTAGTGCTGCTCACCACCTGCAAACATGGCAAAGACTGGCAGAAACACAAGGACGCGCGCTGTGACAAGGACAACGCAGAGTATGACAAgtacgACTACCGTGAAATGCTGCACAACTCTACCTTCTGTCTGGTTCCTCGAGGACGACGCCTGGGATCCTTCCGCTTCCTGGAGGCTCTTCAGgcggCCTGTGTGCCGGTGATGCTGAGTAACGGTTGGGAGCTCCCCTTCTCGGAGGTCATCGACTGGAACACTGCTGCTGTGATCGGGGACGAGAGGCTCCTGCTGCAGATCCCGTCCACTGTTCGCTCCATCCATCAGGACAAGATCCTGGCTCTCCGACAGCAGACGCAGTTCCTCTGGGAGGCCTATTTCTCTTCAGTGGAGAAGATCGTGCTCACCACTCTAGAAatCATCCAGGACCGGGTGCTCCAGCAGAGCTCCAGAAGCAGTGTGATGTGGAACAGTCACCCCGGTGGACTCTTCTCTCTGCCGCAGTACTCCTCATATCTGGGAGACTTTCCTTTCTTCTACGCCAAACTCGGCATCAAGCCGAGTCCCAAGTTCACTGCAGTTATCCATGCAGTGACGCCGCTGGTTTCTCAATCTCAGCCCATTCTCAAGCTCATCGTCTCAGTGGCCAGATCACAGTACTGCGCTCAGattaTTGTGTTGTGGAACTGTGACAAGCCTTTACCTGCCAAACAGCGCTGGCCGGCCACTGCAGTGCCCATTATAGTGATTGAAGGAGAAAACaaggtgATGAGCAGCCGTTTTCAGCCGTATGAAAGCCTCATCAGTGATGCGGTGTTGAGTCTGGATGAAGACACTGTGTTGTCCACCACTGAGGTGGACTTTGCCTTCACGGTGTGGCAGAGTTTCCCGGAGAGGATTGTGGGATATCCTGCCCGCAGTCATTTCTGGGACAATAATAAGGAGCGCTGGGGTTACACTTCCAAATGGACCAACGACTATTCAATGGTTCTCACCGGAGCTGCCATTTACCACAGATATTACCACTTCCTGTACACCCACTTCCTGCCAAGCAGCCTGAAGAGTATGGTGGACCAGCTGGCCAACTGTGAGGATATCCTGATGAACTTCCTGGTGTCTGCGGTCACTAAACTGCCACCGGTCAAAGTCACGCAGAAGAAGCAGTACAAGGAGACCATGATGGGtcagTCGTCTCGAGCCTCGCGCTGGGCCGATCCGGACCACTTCGCCCAGCGGCAGACCTGCATGAACAAGTTCGCCAGCTGGTTTGGCGGCATGCCCCTGGTGCACTCCCAAATGAGACTGGACCCCGTTCTGTTCAAGGACCAGGTCTCCATCCTGCGCAAGAAATACAGGGAGATCGAGCGGCTCTGACCAGACTGGCGCCCCCTGCTGGACGTTCAACAGGGGGCCGTAAGAGACTCTGAAAGGAGAACTGGAGCCCGAGAGCTTTCCTTCAGCACATAcgcgaaacacacacacatctgacggACACCTCTGGAGGGAAGATTTGGTTTTGGGGACGCCACAGATGATCTTTCCCAGCACACGAGCGACAGGAGGGACGCATCATTGTGTTTAGCACTTCATATCCATCCACATCCATTCATACGCGTGTTATCAAAAGTGCCCACTGTGAACCAAGCAaaactcttaaagggacagttcaccc

Function

GO:

id name namespace
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0015020 glucuronosyltransferase activity molecular_function
GO:0050508 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity molecular_function
GO:0050509 N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050211-4 Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including axial mesoderm; brain; germ ring; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in chondrosarcoma; hereditary multiple exostoses; and trichorhinophalangeal syndrome type II. Orthologous to human EXT1 (exostosin glycosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000166668

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030346 lncRNA downstream 791 46412613 ~ 46420558 (-) False XLOC_015045
TCONS_00029633 lncRNA downstream 1568 46416806 ~ 46419781 (-) True XLOC_015045
TCONS_00029626 lncRNA downstream 398541 46019877 ~ 46022808 (-) False XLOC_015042
TCONS_00029623 lncRNA downstream 422126 45993896 ~ 45999223 (-) True XLOC_015041
TCONS_00029619 lncRNA downstream 461194 45943054 ~ 45960155 (-) False XLOC_015039
TCONS_00030348 lncRNA upstream 158429 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA upstream 170688 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00030350 lncRNA upstream 432831 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA upstream 557258 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030351 lncRNA upstream 578763 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00029632 mRNA downstream 202314 46218099 ~ 46219035 (-) True XLOC_015044
TCONS_00029631 mRNA downstream 329744 46091318 ~ 46091605 (-) True XLOC_015043
TCONS_00029630 mRNA downstream 329852 46067527 ~ 46091497 (-) False XLOC_015043
TCONS_00029629 mRNA downstream 332920 46066889 ~ 46088429 (-) False XLOC_015043
TCONS_00029628 mRNA downstream 383514 46035618 ~ 46037835 (-) True XLOC_015042
TCONS_00029635 mRNA upstream 157781 46724211 ~ 46737822 (-) False XLOC_015048
TCONS_00029636 mRNA upstream 201836 46768266 ~ 46775562 (-) False XLOC_015049
TCONS_00029637 mRNA upstream 205588 46772018 ~ 46777963 (-) True XLOC_015049
TCONS_00029638 mRNA upstream 245842 46812272 ~ 46957968 (-) True XLOC_015050
TCONS_00029640 mRNA upstream 624575 47191005 ~ 47276297 (-) True XLOC_015052
TCONS_00029625 other downstream 398470 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 461166 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 2358800 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 2358817 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 3390461 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 833759 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 849160 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 1001283 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000096_00447205_00452255.mRNA True 3770 mRNA 0.44 2 CI01000096 445702 ~ 453382 (-)