RNA id: TCONS_00030351


Basic Information

Item Value
RNA id TCONS_00030351
length 580
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_015051
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46999261 ~ 47173408 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cTCCTCCACGCTCGTCAAAATTAAAAGTGTAATATGATTGGTCCGTTTCTGTTACTCCCGCCCACAATGGGTGTTTAGTTTACTAGGCAACTAAATTAATCATCGAGTATTTTGTTGAATAGTTTAAAAAAGCAGAAGTAAATATTAATTAGTCGACATGTAAATAGCTTAAACTATAACTTCTAAATGTACAACACCAGGAGAGCAGCTCCAGCGATGAAATGGAGCACCTGTGGCCGCTAATGAGGTTTCGTCATCAACCGTCGTCTGCTAATTAGCGAACTAAAGGACTCTGAAGCACTGATGTTTATtataacagaaatgttttttttcttcgcGAAACACGAGACTAAGAAGAGCCAAAATAAACGGACAGGATGGTTTTAAAGAGTGTAAGAAGACGGAATATACACGGACTGACCTGATCTCTAACAGACAGCCATAATCAAGCTAACGTTAATGTTTGATTAGCTGATGCTAACCGGAGACTTTCCTTCATATATTTCTTCGTGTTTTGATCAACGCATCATCATCGTCTCAGGCTGATGGAGGACGAGTAAAAACATGTGTGGAGTCGcgt

Function

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0034249 negative regulation of cellular amide metabolic process biological_process
GO:0017148 negative regulation of translation biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030348 lncRNA downstream 380832 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00030349 lncRNA downstream 381225 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00030347 lncRNA downstream 653160 46491583 ~ 46492033 (-) True XLOC_015047
TCONS_00030346 lncRNA downstream 724635 46412613 ~ 46420558 (-) False XLOC_015045
TCONS_00029633 lncRNA downstream 725412 46416806 ~ 46419781 (-) True XLOC_015045
TCONS_00029653 lncRNA upstream 376160 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030352 lncRNA upstream 587489 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029800 lncRNA upstream 600509 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 758490 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 844298 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00029638 mRNA downstream 187225 46812272 ~ 46957968 (-) True XLOC_015050
TCONS_00029637 mRNA downstream 367230 46772018 ~ 46777963 (-) True XLOC_015049
TCONS_00029636 mRNA downstream 369631 46768266 ~ 46775562 (-) False XLOC_015049
TCONS_00029635 mRNA downstream 407371 46724211 ~ 46737822 (-) False XLOC_015048
TCONS_00029634 mRNA downstream 578763 46421349 ~ 46566430 (-) True XLOC_015046
TCONS_00029640 mRNA upstream 17597 47191005 ~ 47276297 (-) True XLOC_015052
TCONS_00029641 mRNA upstream 112365 47285773 ~ 47323267 (-) True XLOC_015053
TCONS_00029644 mRNA upstream 256314 47429722 ~ 47455944 (-) False XLOC_015056
TCONS_00029645 mRNA upstream 256314 47429722 ~ 47456787 (-) False XLOC_015056
TCONS_00029646 mRNA upstream 257563 47430971 ~ 47452874 (-) True XLOC_015056
TCONS_00029625 other downstream 1122314 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1185010 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029605 other downstream 3082644 44049647 ~ 44062549 (-) False XLOC_015032
TCONS_00029608 other downstream 3082661 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029587 other downstream 4114305 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029642 other upstream 226781 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029643 other upstream 242182 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029659 other upstream 394305 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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