RNA id: TCONS_00029646


Basic Information

Item Value
RNA id TCONS_00029646
length 1400
RNA type mRNA
GC content 0.57
exon number 6
gene id XLOC_015056
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47429722 ~ 47456787 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGCCAGGACGGCGGATACCCGCATTTACCGGAGCCGTACCCGTCGCTGAACTCGCTGCACCAGCATCAGCAGGCGGCCTGGCACTCGCAGCGCTCGCGCTCGGAGGATGCCGGTCTCCTGTCGCAGCCGCACCGAGCGCTGAGCCTCGACCCGCGGCGGGAGTATCCAGGAGTCCCGCGACTGCTGACCCATGGGCTGGGCGACGGAGCTGCGGCGCTCGGGGACGGGCCGCTGGGGATGCACGCGGTGCACCACGGCCTGGATGATATTCAGGGTCTGGAGGAGGCCTCAGCGCTGGGCATCCTGGATCACTCCGTCATCAAGAAAGTTCCACTACCATCCAAGCTGAACGGCTCCACGATCTCTGCTCTGTCCCTCAGTAAAGAAGGCCTGGGTCTGGGCGGAGTGTCTAATCCCGCAGAGGTGTTCTGCTCCGTCCCGGGACGCCTGTCGCTGCTCAGCTCCACCTCCAAATATAAAGTGACAGTAGGAGAAGTGCAGAGACGGCTGGCTCCACCCGAGTGCCTCAACGCCTCGCTGCTTGGAGGAGTCCTGCGCAGAGCCAAATCAAAAAACGGAGGCCGCTGTCTTAGAGAACGGCTGGAGAAGATCGGCCTCAACCTGCCGGCCGGCCGGAGAAAAGCAGCCAACGTCACACTCCTCACAGCGCTGGTGGAAGGTGAAGCGGTTCATCTGGCGCGAGATTTCGGGTATGTTTGTGAGACTGAGTTCCCTGCGCGGGCGACAGCAGAGTACTTGTGCCGACAGACGGAGCCCGATCAGCTGCCCACCAGACGCAGCATGCTGCTCGCTACCAAGGAGATCTGCAAGGAGTTTGTGGACCTGATGTCCCAGGATAGGTCTCCGCTGGGGGCCAGTCGCCCGACGCCCTGCCTGGAGCCCGGAGTGCAGAGTAGTTTGACCCACTTCAGCCTCCTGACCCACGGATTCGGGACCCCTGCCCTGTGCGCCGCGCTTTCCGCCTTCCAGAGCTACTTACTGGAGGCCCTAAAACTGCTGGACAAAGGAGAAAACGGAGGAAAAAACCACCACGACAAGGAGCTCAAGCACCGCAAATAAACAATCAAGCACTTTTTGGAAGCGTGTGTGTATTTATGCGCGAATGTGTGTGTTCCTCACCTGTACGGACTGGTTGAATTCGTCTCTGAAATCCCTGTCAAACTTTGCTGACGGACTCACGAACTCTGCTGATGGAAAGCCAATCAAATGACTCAACAGACGGTTGGGAAAGCAATTCGCTGTGCTGACGAAGCAATTTGGAAATTGTCATTTTGTACTTCATGTTGTATGTTTATATTATCAATGTCGATTCTTGTTATTCTTATTGGCGTATtgcaatgtaaatgtaatatattattaaactAACAATGAATTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0048856 anatomical structure development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040426-1455 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in nucleus. Is expressed in melanoblast; nervous system; and neural crest cell. Orthologous to human TFAP2E (transcription factor AP-2 epsilon).

Ensembl:

ensembl_id ENSDART00000025931

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030351 lncRNA downstream 257563 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 257600 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA downstream 257873 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030348 lncRNA downstream 666610 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00029653 lncRNA upstream 96694 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030352 lncRNA upstream 308023 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029800 lncRNA upstream 321043 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 479024 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 564832 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00029641 mRNA downstream 107704 47285773 ~ 47323267 (-) True XLOC_015053
TCONS_00029640 mRNA downstream 154674 47191005 ~ 47276297 (-) True XLOC_015052
TCONS_00029638 mRNA downstream 473003 46812272 ~ 46957968 (-) True XLOC_015050
TCONS_00029637 mRNA downstream 653008 46772018 ~ 46777963 (-) True XLOC_015049
TCONS_00029636 mRNA downstream 655409 46768266 ~ 46775562 (-) False XLOC_015049
TCONS_00029647 mRNA upstream 7874 47460748 ~ 47474725 (-) True XLOC_015057
TCONS_00029648 mRNA upstream 69133 47522007 ~ 47523793 (-) False XLOC_015058
TCONS_00029649 mRNA upstream 70856 47523730 ~ 47526737 (-) False XLOC_015058
TCONS_00029650 mRNA upstream 71148 47524022 ~ 47527192 (-) False XLOC_015058
TCONS_00029651 mRNA upstream 71161 47524035 ~ 47527095 (-) False XLOC_015058
TCONS_00029643 other downstream 14566 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 30664 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1408092 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1470788 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029608 other downstream 3368439 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029659 other upstream 114839 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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