RNA id: TCONS_00029647


Basic Information

Item Value
RNA id TCONS_00029647
length 2109
RNA type mRNA
GC content 0.55
exon number 8
gene id XLOC_015057
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47460748 ~ 47474725 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAGATAGGCTGTCCTGACTCCAGCACTGAAGGGCCCGGCTCTGGCTCTGCTGACAGCCCGGGGGCCCTGAGCCCGTCTCAGAGAGAGCTGCTGGAGCGATGCCTTCATGCCCTCAATCATGCCAAGAACGACAGCCACACACTGGCAGCGCTGCTCCTGATCACGAGGTTGTGTCCCGCTGCGCAGCTGGATCCCGAGACTCTGCAGCGTATTTTTGAGGCGGTGGGTTTTGATTTACCTGCTCGTCTTCTGCTGACGGCGTGTCGGGGGGTGGAGAGCGCTGGTTTGCCTGCGCAGGAGCTGATCTCTCTGGCCGCCGCGCTTCTAGCCGCTCTCAGCACAGACTCGAACCTGCTGCCTCACCCTCAGCTCCTCAGCACTATCCCACTGTTACTCAACATCCTGGAGAACGGACAGAAACACACTGAAGATGAAGCCGAGAGCAGATCTGCAGACGCTCAGACCACATTCACCACAGATGAGCCTCTGCTTTCTGATTGTTACCAgGTTCTAAACGCAGTGTGTGCTTCAGAAAAGGGCCCCGAGCAGCTCCTGTCCCGCGGGGCCGTTCCAGCGTTATGCAGAGCCGTAATCAAAAAACAAACCCTGAGTAAAGAAAAAGCCCTTCCGCTGCTGGGACGCCTGCTGTCTTCTGGAGTCAGGACTCAGAGTTGGAATAAGCACTCATCTGAACTTCTTTTACTCCTAAGAAACATTTCACAAGATTTCAGCGAAGCTTCAAATGAGGCTCGATTGGAGATGTGCTCTCAGATACCGCTGTTTCTTCCTCCGCCCGGGGTTGAGAATGAAAATACAGATTTTAAGGAGATCGTGGGACATCTCTGGGCTTCGTTGAGGCCTTTGGTTCAAGGGAAGATCAAGCAAGAGCATTTAGGTGCAGTTTTAGTGTTATCCGCGTGTCTTCTGGATCTGTTTGGATGGGAGTCTGTGGGAAATCCTAAATTCTGCTGTTTGCTGGTGAACCGGGCGTGTGTGGAGGTGAGGATGGGTTTGGAGGAGCCGCCAGGGACTGAGATTTCTTTAAGCCTCCAAAACACACTCACAGCCTGCTATCGGATCATGGAAGCAGCAATGGAGCAGGCCTGCACTTCAGATGCAGCCCCAAAACAGACAGCCATCTCTGGGCTGAGCCTCCAGCAGAGCAGGCAGGTCCTCGGAGCTCTGGAGGAGGCCTTTTCTGCTGAAATATACTATCTCAAACAGGTGGAAGAGGCGAGTTATGATGATCCGTTTGTTTTCGCCACTTTCCGCTGTCTCTGTGCTTGGCTTGCTGAGGAAACCTCCTGTCTGAAGGACGACGTTATTAAACTCCTGCCTTTTTTAATCGGCTATGCTAAAACTCACTTTAATGGAGGAGAAAAGGGTCTCGCTGAGTGGATGTCAAAAATGTCCATCAGCAATACTGCACACGACAGGACCTGGAGCAGAGATGCTGCTCTTCGGTACCTGCTGCCGGCGCTGTGCCACCTGTCGGCTGAAGATGAGCCGCGGCGGGAGCTTCTGTGTCTGGACGCTCCTGCTCTGCTGGTGGAGTTTCTGAGCTCCGGATGGGACACGATAAGAGCTCAGAGCGGGACGGAGGAGAACAGAGAGCCCAGTCTGGAGACCTGCTGCTCCGCTTTACTCAACTTCACCATCACAGAGCCGCAGCGAGtcagGTCGGATCCGTGTTTCGTGGCTCTGGAGGTTTTGTTGAGTGAAGCTCTGCCTGTTCTTCTCCATAAGCCATGGCTCCAGGTTTTAGCCGCTTACTGTTGCACTCTGGGCCTCATGATTAGCAGACTGAAGCCGGCATCTGCAGTGTCTGTTGATGCCGCCCAGCGGCGGTGGTTCTCCTCAGTTCTGCAGTTTCTCCGGATGGTTCTGGACTGTTCTCAGGTCAGCGTTCAGTGGGACGAGACTCTAGAGCTGCACAGGCTCAGTCTGCAGGCTCTGAGTGGCTGCGTCCTCAATCAGCCCTGGATCCGCACCCTTATGAGGGATCAAGACTGGCTGAGGAGCGTCTGCTGTCGCCTGGGCTCTGACTCACAGGTCTCAGATCAGCTGGAGGAGCTGCGGCGTGCCCTGGAGAAACAGAAATGA

Function

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0031175 neuron projection development biological_process
GO:0030425 dendrite cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061220-6 Predicted to be involved in neuron projection development and regulation of neuronal synaptic plasticity. Predicted to be located in postsynapse. Predicted to be active in dendrite. Orthologous to human NCDN (neurochondrin).

Ensembl:

ensembl_id ENSDART00000165688

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030351 lncRNA downstream 287340 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 287377 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA downstream 287650 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030348 lncRNA downstream 696387 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00029653 lncRNA upstream 74843 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030352 lncRNA upstream 286172 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029800 lncRNA upstream 299192 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 457173 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 542981 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00029645 mRNA downstream 3961 47429722 ~ 47456787 (-) False XLOC_015056
TCONS_00029644 mRNA downstream 4804 47429722 ~ 47455944 (-) False XLOC_015056
TCONS_00029646 mRNA downstream 7874 47430971 ~ 47452874 (-) True XLOC_015056
TCONS_00029641 mRNA downstream 137481 47285773 ~ 47323267 (-) True XLOC_015053
TCONS_00029640 mRNA downstream 184451 47191005 ~ 47276297 (-) True XLOC_015052
TCONS_00029648 mRNA upstream 47282 47522007 ~ 47523793 (-) False XLOC_015058
TCONS_00029649 mRNA upstream 49005 47523730 ~ 47526737 (-) False XLOC_015058
TCONS_00029650 mRNA upstream 49297 47524022 ~ 47527192 (-) False XLOC_015058
TCONS_00029651 mRNA upstream 49310 47524035 ~ 47527095 (-) False XLOC_015058
TCONS_00029652 mRNA upstream 51488 47526213 ~ 47527093 (-) True XLOC_015058
TCONS_00029643 other downstream 44343 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 60441 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1437869 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1500565 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029608 other downstream 3398216 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029659 other upstream 92988 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000223_00416958_00424933.mRNA True 2862 mRNA 0.53 6 CI01000223 416943 ~ 425464 (-)