RNA id: TCONS_00029652


Basic Information

Item Value
RNA id TCONS_00029652
length 718
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_015058
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47522007 ~ 47527192 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTAGGTTTTCTCTTCACGTTAGGTTAGCTGTTTATTCTCTATATAACACActgtgttttatttacatttcctgATATTCGAGTATGCTTCATAATGCGAGTGTGTAACGGCCTATCTGTTTATCAAGCCTGTTTGCTTGTGACGTAGTTATCATAAGATGTGCGTTTTCTCTAAACTCAGTAATATAATCCGTAGCCATTATAGTCCATTTTAGCAttcataatttctgtttaactggtAATATGCGATGTAACAATAGGCTATATATAACGTAATGTTTACATAGGCGTTTTACAGTAGCCTGCAGAGATACATTTATCTTGTGTTTATTGTCGGTGTAGTGAACGTCAGAGATGGGTTCGACTTCAAAAATGACACACACGGTTTTTCTGAGTGTCATCTTCAGCCTGATAGCCGTGGTTTCTGGCCGCAGTCCACGCACTGTGGATCAGGTGTCGGAAGCGGACATCCAGCGCCTGCTTCACGGTGTAATGGAGCAGCTGGGCATCGCGCGGCCCCGGGTCGAATATCCCGCGCACCAGGCCACCAACATAGTTGGTCCTCTCAGCATCCAAGGTGGTGCTCATGAGGGGCTCCAGCATCTCGGGCCGTATGGGAACATCCCTAACATTGTAGCAGAGTTAACAGGGGACAGTGTTCCCAAAGATTTCAGCGAGGACCACGGTTATCCTGACCCTCCCAACCCTTGCCCCCT

Function

GO:

id name namespace
GO:0038098 sequestering of BMP from receptor via BMP binding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0036122 BMP binding molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1687 Predicted to enable enzyme regulator activity. Predicted to be involved in regulation of hormone secretion. Predicted to act upstream of or within neuropeptide signaling pathway. Located in motile cilium. Is expressed in central nervous system; endocrine system; and sensory system. Orthologous to human SCG5 (secretogranin V).

Ensembl:

ensembl_id ENSDART00000171379

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030351 lncRNA downstream 352805 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 352842 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA downstream 353115 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030348 lncRNA downstream 761852 46724859 ~ 46764361 (-) False XLOC_015048
TCONS_00029653 lncRNA upstream 22475 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030352 lncRNA upstream 233804 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029800 lncRNA upstream 246824 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 404805 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 490613 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00029648 mRNA downstream 2420 47522007 ~ 47523793 (-) False XLOC_015058
TCONS_00029647 mRNA downstream 51488 47460748 ~ 47474725 (-) True XLOC_015057
TCONS_00029645 mRNA downstream 69426 47429722 ~ 47456787 (-) False XLOC_015056
TCONS_00029644 mRNA downstream 70269 47429722 ~ 47455944 (-) False XLOC_015056
TCONS_00029654 mRNA upstream 22477 47549570 ~ 47555956 (-) True XLOC_015059
TCONS_00029655 mRNA upstream 37797 47564890 ~ 47570672 (-) False XLOC_015060
TCONS_00029657 mRNA upstream 38523 47565616 ~ 47571456 (-) False XLOC_015060
TCONS_00029656 mRNA upstream 38523 47565616 ~ 47571456 (-) False XLOC_015060
TCONS_00029658 mRNA upstream 40462 47567555 ~ 47571797 (-) False XLOC_015060
TCONS_00029643 other downstream 109808 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 125906 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1503334 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1566030 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029608 other downstream 3463681 44058992 ~ 44062532 (-) False XLOC_015032
TCONS_00029659 other upstream 40620 47567713 ~ 47567848 (-) True XLOC_015061

Expression Profile

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