RNA id: TCONS_00029656


Basic Information

Item Value
RNA id TCONS_00029656
length 1005
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_015060
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47564890 ~ 47571808 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGGGGCAGTCGAAAGCAAAGAAAGGAGCAGTGGAGGAGGAGCCTCTTCTGAAGGAGAACCCCCATCGCTTTGTCATTTTCCCAATTCAGTATCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCCTCTTTCTGGACAGCTGAGGAGgtTGATCTGTCCAAAGATCTGCAACACTGGGATTCCCTGAAAGACGAGGAGAGATATTTCATCTCCCATGTTCTGGCTTTCTTTGCTGCAAGTGATGGCATTGTCAATGAGAACTTGGTGGAGCGTTTCACTCAGGAGGTCCAGGTGACTGAAGCCCGCTGCTTCTATGGCTTCCAGATAGCAATGGAAAACATCCACTCAGAAATGTACAGCCTGTTGATTGACACCTACATTAAAGATTCTAAAGAGAGGGAATTTTTGTTCAATGCCATTGAGACAATGCCATGTGTAAAGAAGAAGGCTGACTGGGCACTCAACTGGATTGGTGATAAAAATGCACGATATGGTGAGAGAGTGGTGGCCTTTGCTGCAGTGGAGGGAATCTTCTTCTCTGGGTCTTTTGCTTCTATTTTCTGGCTAAAGAAGAGGGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTGATCAGCAGAGATGAGGGTCTTCATTGCGACTTCGCCTGCCTCATGTTTAAACACTTGATCAACAAACCATCAGAAGAAACCGTGAAGAAAATCATCATGAATGCAGTTGAAATTGAGCAGGAGTTCCTGACTGATGCTCTTCCCGTGAAGCTCATTGGCATGAACTGTGACCTGATGAAGCAGTACATTGAGTTTGTGGCTGACCGACTGTTGCTGGAGCTGGGATTTGACAAGGTCTATAGAGTGGAGAATCCTTTTGACTTCATGGAGAACATTTCGTTGGAGGGCAAGACCAACTTCTTCGAGAAGCGAGTGGGCGAGTACCAGCGCATGGGAGTCATGTCGGGAACTACAGATAACACTTTCACTCTGGatgctgatttttaa

Function

GO:

id name namespace
GO:0009263 deoxyribonucleotide biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006260 DNA replication biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko00480 Glutathione metabolism
ko00983 Drug metabolism - other enzymes
ko04115 p53 signaling pathway
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-990415-25 Predicted to enable ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor. Predicted to be involved in deoxyribonucleotide biosynthetic process. Predicted to act upstream of or within DNA replication. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; proliferative region; and tail bud. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RRM2 (ribonucleotide reductase regulatory subunit M2).

Ensembl:

ensembl_id ENSDART00000158071

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029653 lncRNA downstream 15268 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030351 lncRNA downstream 392208 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 392245 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00029639 lncRNA downstream 392518 47123688 ~ 47173098 (-) False XLOC_015051
TCONS_00030349 lncRNA downstream 801648 46737118 ~ 46763968 (-) True XLOC_015048
TCONS_00030352 lncRNA upstream 189441 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029800 lncRNA upstream 202461 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030353 lncRNA upstream 360442 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 446250 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00030355 lncRNA upstream 613842 48185298 ~ 48186157 (-) True XLOC_015071
TCONS_00029654 mRNA downstream 9660 47549570 ~ 47555956 (-) True XLOC_015059
TCONS_00029650 mRNA downstream 38424 47524022 ~ 47527192 (-) False XLOC_015058
TCONS_00029651 mRNA downstream 38521 47524035 ~ 47527095 (-) False XLOC_015058
TCONS_00029652 mRNA downstream 38523 47526213 ~ 47527093 (-) True XLOC_015058
TCONS_00029649 mRNA downstream 38879 47523730 ~ 47526737 (-) False XLOC_015058
TCONS_00029661 mRNA upstream 7355 47578811 ~ 47587719 (-) True XLOC_015062
TCONS_00029662 mRNA upstream 200203 47771659 ~ 47782586 (-) False XLOC_015064
TCONS_00029663 mRNA upstream 201559 47773015 ~ 47782916 (-) False XLOC_015064
TCONS_00029664 mRNA upstream 229094 47800550 ~ 47832853 (-) True XLOC_015065
TCONS_00029665 mRNA upstream 404460 47975916 ~ 47997424 (-) True XLOC_015067
TCONS_00029643 other downstream 149211 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 165309 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1542737 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1605433 45955079 ~ 45960183 (-) True XLOC_015039
TCONS_00029608 other downstream 3503084 44058992 ~ 44062532 (-) False XLOC_015032

Expression Profile

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