RNA id: TCONS_00029664


Basic Information

Item Value
RNA id TCONS_00029664
length 2877
RNA type mRNA
GC content 0.56
exon number 18
gene id XLOC_015065
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47800550 ~ 47832853 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATCTACGCATCCCTTCCATTTCTTAAATTAGCCACCTTAAGCTTCGAGATACCGCCCCCAATTTCAGTGTCGGTACGGAGCCGCCAGGCCGGGACAGAGACGGAGAGAGAGCCCTCGGCCATGGAAGCGCTCGGACCCGGCCCGCCTGCCCCTACCTCCCTCTTCCAGCCACCGCGCCGGCCCGGCTTGGGTACGGTGGGGAAGCCGATTCGCCTGCTGGCCAATCACTTCCAGGTGCAGATCCCCAAGATCGACGTCTACCATTATGACATCGACATCAAACCTGAAAAACGGCCCCGCAGGGTCAACAGAGAGGTGGTGGACACAATGGTTAGACATTTTAAGATGCAGATCTTTGGGGACCGGCAGCCTGGATATGATGGAAAGAGGAACATGTACACGGCACATCCGCTACCCATCGGGAGGGACAGGGTGGATCTGGAGGTGACGCTGCCGGGTGAAGGGAAGGATCAGACTTTTAAGGTGTCTCTGCAGTGGGTGTCGGTGGTCAGTCTGCAGATGCTACTGGAAGCTCTGTCTGGTCACCTGAACGAGGTGCCGGAGGATTCAGTTCAGGCTCTGGACGTCATCACTCGTCACCTGCCTTCCATGCGGTACACTCCAGTAGGCCGGTCCTTCTTCTCTCCACCAGAGGGCTACTATCATCCACTGggaggagggagggaggtgtGGTTCGGTTTCCATCAGTCTGTCCGTCCTGCCATGTGGAACATGATGCTCAACATAGATGTGTCAGCAACAGCGTTTTACAGAGCTCAGCCTGTCATCGAATTCATGTGTGAGGTTTTGGACATCCAGAACATCAACGAGCAGACCAAACCCCTCACAGATTCACAACGTGTCAAGTTCACCAAGGAGATCCGAGGACTGAAAGTGGAGGTCACACACTGCGGCCAGATGAAGAGGAAGTACCGTGTGTGTAATGTCACGCGCCGCCCAGCCAGTCATCAGACGTTTCCTTTGCAGCTTGAGAATGGACAAGCTATGGAGTGCACCGTTGCCCAGTATTTCAAACAAAAGTACAGCCTGCAGCTCAAATACCCCCACCTGCCCTGCCTCCAGGTGGGACAGGAGCAGAAGCACACGTACCTTCCCCTGGAGGTTTGTAATATAGTGGCAGGACAGCGCTGCATAAAGAAACTAACAGATAATCAGACCTCCACCATGATCAAAGCTACGGCCCGCTCAGCCCCAGACAGACAGGAGGAGATCAGCCGACTGGTCAAAAGCAACAGTATGGTTGGCGGGCCCGACCCTTATCTGAAAGAGTTTGGCATTGTGGTGCACAATGACATGACCGAGGTGACAGGGCGGGTCCTCCCAGCGCCCATGCTGCAGTATGGGGGCCGGAATAAGACGGTGGCCACACCCAACCAGGGCGTCTGGGACATGAGGGGGAAGCAGTTTTATGCCGGAATAGAGATCAAGGTTTGGGCCGTGGCCTGCTTCGCCCCTCAGAAACAATGCAGAGAGGACCTGCTCAAgagttTCACTGACCAGCTGCGCAAGATTTCCAAGGATGCTGGGATGCCGATCCAAGGCCAGCCGTGCTTCTGCAAATACGCCCAGGGTGCAGACAGTGTGGAGCCCATGTTCAAGCATCTCAAGATGTCTTACGTGGGCCTGCAGCTCATCGTGGTCATCCTGCCCGGAAAAACACCTGTCTATGcggAGGTGAAGCGTGTGGGAGACACTCTCCTGGGAATGGCCACTCAGTGTGTTCAGGTGAAGAACGTGGTAAAAACGTCTCCTCAGACGCTCTCCAACCTCTGTCTGAAGATCAACGCCAAACTAGGAGGCATCAACAATGTGCTGGTGCCACATCAGAGGCCTTCTGTGTTCCAGCAGCCGGTGATCTTCTTGGGTGCGGATGTCACTCACCCTCCAGCGGGCGATGGGAAGAAGCCGTCCATCGCTGCAGTGGTAGGCAGTATGGACGGACACCCGAGCCGATACTGCGCCACCGTACGGGTGCAAACGTCCCGCCAGGATCTGTCCCAGGAGCAGCTCTTCAGCCAGGAGGTCATCCAGGATCTCACCAACATGGTGCGCGAGCTGCTCATTCAGTTCTACAAATCCACCCGATTCAAGCCCACGCGCATTATCTACTACCGCGGAGGAGTTTCTGAGGGCCAGATGAAGCAGGTGGCGTGGCCAGAGCTGATCGCCATCAGGAAAGCCTGCATCAGTCTAGAAGAGGATTACAGGCCGGGAATCACATACATCGTAGTGCAGAAACGCCACCACACTCGACTCTTCTGCTCCGACAAAGCCGAgaggGTTGGGAAGAGTGGCAACGTCCCAGCAGGCACTACGGTGGACAGCACCATCACACACCCCTCAGAGTTTGACTTCTACCTGTGCAGCCATGCTGGCATCCAGGGCACCAGCCGTCCCTCTCACTATCACGTGTTGTGGGACGACAACTGTTTCACCGCTGACGAGCTCCAGCTTTTGACCTATCAGCTCTGCCACACTTATGTGCGCTGCACCCGCTCCGTCTCCATCCCCGCGCCAGCTTACTATGCCCGGCTAGTGGCCTTCCGTGCACGCTATCATTTAGTGGACAAAGACCATGACAGTGCTGAAGGCAGTCACGTATCAGGACAGAGCAACGGTCGAGACCCGCAGGCGCTGGCGAAAGCTGTGCAGATTCACTACGACACACAGCACACCATGTACTTCGCCTGACCACAGCCAGCAGGAGGCGCACTTCTACACTCCTTCCATCTATATctattatctctctctctctctctctctctctctctctctctctctctctctattatctcactctctctctctcatgctgTATTTCTCTCTGTTATCTCTCTCTCTTGAAGCGGGGGC

Function

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0000932 P-body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5357 Predicted to enable miRNA binding activity. Predicted to be involved in miRNA mediated inhibition of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in P-body. Predicted to be part of RISC complex. Is expressed in several structures, including eye; fin; integument; pleuroperitoneal region; and somite. Orthologous to human AGO4 (argonaute RISC component 4).

Ensembl:

ensembl_id ENSDART00000170988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029800 lncRNA downstream 21913 47773917 ~ 47778637 (-) True XLOC_015064
TCONS_00030352 lncRNA downstream 39059 47760897 ~ 47761491 (-) True XLOC_015063
TCONS_00029653 lncRNA downstream 250202 47549568 ~ 47550348 (-) False XLOC_015059
TCONS_00030351 lncRNA downstream 627142 47145193 ~ 47173408 (-) True XLOC_015051
TCONS_00030350 lncRNA downstream 627179 46999261 ~ 47173371 (-) False XLOC_015051
TCONS_00030353 lncRNA upstream 99045 47931898 ~ 47932934 (-) True XLOC_015066
TCONS_00030354 lncRNA upstream 184853 48017706 ~ 48024071 (-) False XLOC_015069
TCONS_00030355 lncRNA upstream 352445 48185298 ~ 48186157 (-) True XLOC_015071
TCONS_00030356 lncRNA upstream 404797 48237650 ~ 48239011 (-) False XLOC_015072
TCONS_00030357 lncRNA upstream 404797 48237650 ~ 48239068 (-) False XLOC_015072
TCONS_00029663 mRNA downstream 17634 47773015 ~ 47782916 (-) False XLOC_015064
TCONS_00029662 mRNA downstream 17964 47771659 ~ 47782586 (-) False XLOC_015064
TCONS_00029661 mRNA downstream 212831 47578811 ~ 47587719 (-) True XLOC_015062
TCONS_00029660 mRNA downstream 228742 47567969 ~ 47571808 (-) True XLOC_015060
TCONS_00029658 mRNA downstream 228753 47567555 ~ 47571797 (-) False XLOC_015060
TCONS_00029665 mRNA upstream 143063 47975916 ~ 47997424 (-) True XLOC_015067
TCONS_00029666 mRNA upstream 170838 48003691 ~ 48015928 (-) False XLOC_015068
TCONS_00029667 mRNA upstream 172101 48004954 ~ 48010490 (-) True XLOC_015068
TCONS_00029668 mRNA upstream 185039 48017892 ~ 48019366 (-) True XLOC_015069
TCONS_00029669 mRNA upstream 204945 48037798 ~ 48039506 (-) False XLOC_015070
TCONS_00029659 other downstream 232702 47567713 ~ 47567848 (-) True XLOC_015061
TCONS_00029643 other downstream 384145 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 400243 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 1777671 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 1840367 45955079 ~ 45960183 (-) True XLOC_015039

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000223_00357780_00374635.mRNA True 4159 mRNA 0.53 19 CI01000223 357559 ~ 375552 (-)