RNA id: TCONS_00029678


Basic Information

Item Value
RNA id TCONS_00029678
length 1070
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_015078
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48364312 ~ 48371092 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTGAAACGGAAGGCTCTTCACTCCAGAGCGGAAGTGCCCTCGTTCTTTTTCTACCCCGGTCTGCCATCATGGTGTTCAAGCGTTTCGTGGAGATCGGCCGCGTGGCCTTCATCGCTTTCGGTCCTCATGAGGGGAAACTGGTGGCCATCGTGGACGTGATCGACCAGAACAGGGCTCTGGTAGACGGACCGTGCACTGGAGTGAAGCGTCAGGCGCTGCCCTTCAAGTGTCTGCAGCTCACAGATTACGTCATTAAAGTCCCTCACAGtgcccGTCAGAAGTACGTGCGACGCGCCTGGGAAAAGGCTGAGATCAGCAAGAAGTGGGAGGAGAGCAGCTGGGCCAAGAAGATCGAGGCCAGGAagaagAGAGCTGCAATGTCTGACTTTGATCGCTACAAGGTGTCGAAGGCCAAGAAAATGAGGAATAAGATCATCAGACACGAGATGAAGAAGCTCCAGAAAGCTGCGGCTCAGAAGAAAGCATAAACTCTCAATAAACCAGTTTAACTGTAAAGCAGACTCTGCTCGTCTCTTAAACTCAGTGTATTTTCAGATCATTGCTCTGATCTTTCTTCAGTGTGGAACCTTTACTTTATAGATGTTAGTTTATGGTGTGTTTACTGGTTCTGAGCTTTTACTTTAGGattatttcttctgaaaaaagaacagaaaagacTTGAATTCAAATGATACGTGCACACATTACTATATCATCCTTTTATATATTAGACTGATTTACTCTTCCGGTTACAAAACATACAAATGTGTAAGAAatctatattttgatggaaacaaaACCATTTCACTCTCCAAATCTATAAAACACACAGAAACTGGTCTGCATTTTggtaaaatctgtttattttgcaTGACCTGTTAACTGTAAAAGGCTGTAACTGTAAAATGTGCGTGCAAGAAGCAACCTTCATTTAATAATACAGCTTTCTTTAACCAGTCTTGATCTCAATGTTTTAGCATGTTGAATTGTAGCCAGACACACATCTGTTTGTTTTGCAGTCTGCTGTTGGCATGGTTTATCCAAATATGATCGTCACTTCCTCGTC

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-2085 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL14 (ribosomal protein L14).

Ensembl:

ensembl_id ENSDART00000169464

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029677 lncRNA downstream 15311 48339346 ~ 48349001 (-) True XLOC_015077
TCONS_00029676 lncRNA downstream 23490 48339346 ~ 48340822 (-) False XLOC_015077
TCONS_00030365 lncRNA downstream 27779 48334088 ~ 48336533 (-) False XLOC_015076
TCONS_00030364 lncRNA downstream 34011 48328548 ~ 48330301 (-) False XLOC_015075
TCONS_00029672 lncRNA downstream 58885 48300582 ~ 48305427 (-) True XLOC_015073
TCONS_00029675 mRNA downstream 27777 48334573 ~ 48336535 (-) True XLOC_015076
TCONS_00029674 mRNA downstream 34025 48328898 ~ 48330287 (-) True XLOC_015075
TCONS_00029673 mRNA downstream 52203 48308750 ~ 48312109 (-) True XLOC_015074
TCONS_00029671 mRNA downstream 57547 48300293 ~ 48306765 (-) False XLOC_015073
TCONS_00029669 mRNA downstream 324806 48037798 ~ 48039506 (-) False XLOC_015070
TCONS_00029679 mRNA upstream 11871 48382963 ~ 48391434 (-) False XLOC_015079
TCONS_00029680 mRNA upstream 12432 48383524 ~ 48389386 (-) False XLOC_015079
TCONS_00029681 mRNA upstream 15161 48386253 ~ 48391415 (-) True XLOC_015079
TCONS_00029659 other downstream 796464 47567713 ~ 47567848 (-) True XLOC_015061
TCONS_00029643 other downstream 947907 47415590 ~ 47416405 (-) True XLOC_015055
TCONS_00029642 other downstream 964005 47400189 ~ 47400307 (-) True XLOC_015054
TCONS_00029625 other downstream 2341433 46019877 ~ 46022879 (-) False XLOC_015042
TCONS_00029620 other downstream 2404129 45955079 ~ 45960183 (-) True XLOC_015039

Expression Profile

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