RNA id: TCONS_00030550


Basic Information

Item Value
RNA id TCONS_00030550
length 406
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_015228
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8717155 ~ 8777496 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attcacaacCGGAAGAAGCAGTTTGAATGTGTCATACCATGTAGCTCCAGTTTGAAGTTGAAGTGTCTGGTACCAAGCGTTGGAAAAACCACTGTCTGCAAACCGAGGAACATTACAGAAATGTAGCTGAATGACCGAGGGACGTCTTTAAACCTCCGCTATCCTCATCAGCAGATTTGAAGCGATAATCGGTTAATTTTTAAACATCGTGCATTTCCCTAGAGAGCGATGTCTGGAGTGTCCAGCAATGACTGTCCACACTTGGAGTGTGTGGGGGAGATCACCAAAGAAGAACTCATCCAGAAGTCTCATggTCAGTGTCAGGACTGCAAAGTTGGGGGACCAAATCTTTGGGCATGTCTAGAGAATGGCTGTTCATATGTTGGCTGTGGAGAATCGCATGCTG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016477 cell migration biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051298 centrosome duplication biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007411 axon guidance biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2323 Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to be involved in several processes, including axon guidance; centrosome duplication; and protein deubiquitination. Predicted to act upstream of or within endocytosis and ubiquitin-dependent protein catabolic process. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Orthologous to human USP33 (ubiquitin specific peptidase 33).

Ensembl:

ensembl_id ENSDART00000137872

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033241 lncRNA upstream 26136 8690658 ~ 8691029 (+) True XLOC_015227
TCONS_00033238 lncRNA upstream 229027 8485011 ~ 8488138 (+) False XLOC_015225
TCONS_00030555 lncRNA downstream 88167 8814239 ~ 8825386 (+) True XLOC_015229
TCONS_00033478 lncRNA downstream 406513 9132585 ~ 9330209 (+) True XLOC_015231
TCONS_00033479 lncRNA downstream 590247 9316319 ~ 9318279 (+) True XLOC_015232
TCONS_00033480 lncRNA downstream 925644 9651716 ~ 9657047 (+) False XLOC_015236
TCONS_00033481 lncRNA downstream 925928 9652000 ~ 9657047 (+) False XLOC_015236
TCONS_00030547 mRNA upstream 54061 8649293 ~ 8663104 (+) False XLOC_015226
TCONS_00030548 mRNA upstream 56961 8649356 ~ 8660204 (+) True XLOC_015226
TCONS_00030546 mRNA upstream 404966 8261109 ~ 8312199 (+) True XLOC_015224
TCONS_00030544 mRNA upstream 602557 8112449 ~ 8114608 (+) True XLOC_015222
TCONS_00030541 mRNA upstream 666667 8031234 ~ 8050498 (+) False XLOC_015221
TCONS_00030552 mRNA downstream 52418 8778490 ~ 8842472 (+) False XLOC_015229
TCONS_00030553 mRNA downstream 53092 8779164 ~ 8806902 (+) False XLOC_015229
TCONS_00030554 mRNA downstream 54371 8780443 ~ 8840896 (+) False XLOC_015229
TCONS_00030556 mRNA downstream 335813 9061885 ~ 9138497 (+) True XLOC_015230
TCONS_00030557 mRNA downstream 809949 9536021 ~ 9558915 (+) True XLOC_015233
TCONS_00030545 other upstream 527765 8189285 ~ 8189400 (+) True XLOC_015223
TCONS_00030543 other upstream 669908 8045416 ~ 8047257 (+) True XLOC_015221
TCONS_00030536 other upstream 993224 7723870 ~ 7723941 (+) True XLOC_015217
TCONS_00030535 other upstream 993582 7723394 ~ 7723583 (+) True XLOC_015216
TCONS_00030534 other upstream 995775 7721212 ~ 7721390 (+) True XLOC_015215
TCONS_00030568 other downstream 1105266 9831338 ~ 9833806 (+) False XLOC_015238
TCONS_00030569 other downstream 1111960 9838032 ~ 9841864 (+) False XLOC_015238
TCONS_00030571 other downstream 1149457 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030577 other downstream 1247809 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030590 other downstream 1479929 10206001 ~ 10206118 (+) True XLOC_015249

Expression Profile

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