RNA id: XM_036976890.1


Basic Information

Item Value
RNA id XM_036976890.1
length 1238
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110518391
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15007790 ~ 15014612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGATACTTTCCCTGCCACAGTGGACAATTCTACAAACACCATCAACAATTCTACAAATGTGACTTTCACTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGATCAACGATTATCTGGTGGACAGAAAGGTAACTTTACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCATATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTACGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACACGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCGAAGAAGATTTCAACACCGCTGCTGTCGACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421769 lncRNA upstream 34716 14972729 ~ 14973074 (+) True G371113
TU421767 lncRNA upstream 36000 14971481 ~ 14971790 (+) True G371111
TU421757 lncRNA upstream 44859 14962632 ~ 14962931 (+) True G371101
TU421750 lncRNA upstream 48295 14959238 ~ 14959495 (+) True G371094
TU421589 lncRNA upstream 49048 14958511 ~ 14958742 (+) True G370961
TU421817 lncRNA downstream 1209 15015821 ~ 15056218 (+) True G371159
TU421834 lncRNA downstream 52413 15067025 ~ 15088540 (+) True G371170
TU421793 lncRNA downstream 60423 15075035 ~ 15075700 (+) True LOC110518158
TU421835 lncRNA downstream 63095 15077707 ~ 15100378 (+) True G371171
TU421837 lncRNA downstream 66080 15080692 ~ 15102326 (+) True G371172
XM_021601874.2 mRNA upstream 8354 14995248 ~ 14999436 (+) True dnlz
XM_021601856.2 mRNA upstream 91112 14912515 ~ 14916678 (+) False dolk
XM_036976878.1 mRNA upstream 115596 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976889.1 mRNA downstream 13191 15027803 ~ 15034589 (+) True LOC110523290
XM_036976895.1 mRNA downstream 33127 15047739 ~ 15054353 (+) False LOC110519479
XM_036976894.1 mRNA downstream 51015 15065627 ~ 15075558 (+) False LOC110518158
XM_036976887.1 mRNA downstream 72266 15086878 ~ 15096757 (+) True LOC110519478
XM_036976892.1 mRNA downstream 102612 15117224 ~ 15145520 (+) False uck1
TU421530 other upstream 202319 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 639629 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 681895 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 748657 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1238494 13765247 ~ 13769296 (+) True G369763
TU421788 other downstream 33566 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 109678 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 776947 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1204994 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1721030 16735642 ~ 16738500 (+) True G372373

Expression Profile