RNA id: XM_036976962.1


Basic Information

Item Value
RNA id XM_036976962.1
length 3918
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110523351
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17161638 ~ 17179125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagcGAGAGGGGAGTGGACagcgagagggggaaagagaatggcatgagagtggagagagagggaaagcagGGCATATAATTGAATAAGATTCCTAGAAGATCTGAACGGGTGAGTAGGCTACTAGTCCCTGAGCTGCTGATTTAAACAGGACACTCAGAAGAGTAGTGGGACGCTGAGTTAATGGATCTTTCTTGAGGCGTTGAATACTTACGGCGTCGCTGTTCATGGAGATCTGGACACTTCTATTCCTGGCTCATATATCACAGCTGCCCTGCAGGAATTGAAGCCACTAATGACCCCAGCGACGGAGAAGGAGGCGAGGTCTGTAGAGAAAGGGGCTACTCTTACATCCCATCGCTCCAGAGCACTCAATCTGCTTACTGGGGACATGCGTGTGTATGGAGAATGGATAAAAAGGCAGATTGTGGTGGTTCAGGTGGTGGACTGGGTCCTACGTGGGGTGGCCCAGGTCATGTTTGTCAACAACCCCCTTAGTGGGCTGCTCATCACGTTTGGCCTGGTGCTGCAGAACCCCTGGTGGGGCCTGAACGGACTGCTAGGATCCCTCGCTTCCACACTGTCTGCACTCCTGATTAGACAAAACATGGGTGCCATATCTGCTGGTTTATATGGCTACAATGGGACCCTGGTTGGAATGCTGATGTGTGTATTCTCGGCCAAAGGGGACTGGTACTGGTGGCTTCTGCTCCCTAATATGTTCATGTCCATGTTATGTCCCATAGTCTCCAGTGCCCTGGGCTCAGTGTTCAGCAAATGGGACCTCCCTGTGTTCACTCTACCATTCAACATCCTTGTGTGTTTGCACATGGCTGCCATGGGGTCTAACCACCCCTACTTTCCAGAGGTGCTGGTGCAGCCAAAGTCCTCCCTCCATCTGAACACCACCTTGGCAGAACGAAGCATACCTCAGCTCTTGATGGCGGTGCCAGTTGGCGTGGGTCAGGTGTACGGCTGTGACTGCCCCTGGACAGGAGGAATCTTCATCATAGCCCTGCTGCTTTCCTCCCCAACCATCTGCATGCACGCTGTACTGGGCTCTATTGTTGGTGTAGTGTCCGGTCTTGTTCTGGCTGCTCCTCATGAGGACATCTACTCAGGACTGTGGGGCTACAACAGTTGTCTGTCCTGCATCGCTATTGGAGGGGTGTTCTATGCACTGACATGGCAGAGTCATCTACTGGCTATTACCTGTGCCTTTTTCTGTGCGTACATGGGTTTGGCCATTTCAAATCTGATGTCCATATTTGGGCTACCAGCATGCACCTGGCCTTTCTGCCTGTCTGCCCTCACCTTCCTCCTCATCACCACTGAATCCAGAGCCATACACAGACTGCCTCTGTCGGCCGTGACGTACCCTGAGGAGAACAGGCGCTACAACAAAGAGGGGTCACCAGAAAATCACCAGGAGGTTCAGCAGAACATCAGTAAAGAGGAGAAACTGctggagaaaagagaagagataaAGCCTCATATCAGCCtgtcagtagagtagtgtgtCTTCTGAGGACACAAAGTGAATAGCCCATCTCTCCGTGAATGCTGGTAGCCCATGGAAAAAATATAGGAAAATGTTAGCAAATTATAGTAAAGTCAACGCTGGAGTTAGAGACATTGAAAACATATTGGCTAGGATGTCAATAGCTATTGTCTTACAGTCAAAGAAACCTTTGATTTAATTTCATCTTCCTCTACTGTTTTGAAAAGCACAGTTTTTCTATCCTGGAATCCACACTGAATATGATTCCGGGCTGGAGTTTCACTATAGTCTACAAATACTTTTGCAATGAGCCTAATAGTCTCTGGACTACAACAAGTTTAGCATCCTTACATTGGACTCAATATTTTATTGTAGAATAGTTGTGTTTTGCAAGTACACCTTTTTACGTATGGGCTTTGATTCAGGCTGTACCACTAATTTGTAATAACTTTATTGCTCAGTAGAGGGCAGCACTCACCAAAGGAAGCCGATGCCACTGCTGTGTCTGAAGGAGTCATTTTTGGAAGCTCAAAATAAGCACTGTTTATATGAAACAATTTCTGTTACAAGTTTACTTATTCTATTTATTAGATTAgtagagaggtgaggggggatacACCCGGACAGAAATACATTTCTTCTCTTTGGATGTAGAGAGGAATTTACAGTGCAGTAGATCATCACTGCAGTTCAGCCAGTGAGTTGTTAAAGGGCGCTCTCATTAAGTTCTCTTCCAGAAAAACCAGGCTATTTTCAGACCGGTACTGTACATCACGACCTCGCCTCGTCTGCACTCCGAGGTAGTCATATTATTGGAGAGGACAGTGATGGATGTGAAGAAGACACATTTGTGAGAGATATTCTCTGAAACGTGTCCACGATCTTCTTTGTTTCACCAGTCTACTCCCAACATCAGGTGGGAAGTAACTGCATAaattatactgtgtgtgtgtttgcatgggtacatatgtatatctgtatatattttCTCGTGTGTCTGTGTTAAACCGTGACACAAGTTCACACGGTCCAGCTGCAGTGGCAGTCACACTCCCAGGCACGTGAGAGTAAaagcagacaggagagagggaggggaatggagCAGAAACAAGATGAGGGGTTGGGCGAGGAGATTGAAAAAAAGGATTACTCAACTAAAAATGAACTGAATCACGTTCTTGATAGTCCACTTCCTCACATCCTCCACTCTCATTAAAACCACAGCCACATAGTCATAACCatcgcctatttctacaatttctcttcttaaaatctgattttaaatctaaccttaaccacactgctaactttatgcttaaccttaaattaagaccaaaaaacgAGGCCCTTTTTTCTCATGAATTTCtactacagtgcctttggaaagtattcagaccacatgactgttttccacattttgttaagttacagacattctaaaatggataaaatatatattttttcctcagcaatctacacacaataccccataatgacaaagccaaaaagTTTTTTTAGAAAAAACAGAaacacattatttacataagtattcagaccctttgtgatGAGACTTGatattgagctcagatgcatcctgtttccattgatcatccttgtgatgtttctacaacttgattggagtccaccgatTTAGAATTTgaggctgtggtaactagtgacaaccctgGGGACTATTCCAAACACACCATCGCTCTAGCGATGGGTGATTCTGATCGAATTCCTCAGGGATTCCTGCTTTAACTTCTCACACGTGTGCCAACCTCAGCGACTGATTTAGATTCGGAAAACCAGACAAACTCTCTGCACTCAAtctacaaatcaaatgtattttagaaagcccttttatttaaatgttttacatgagcagttgtcacaaagtgctttacagattaCAGGCTAGGATAAACAAACCCAGTGAAATTAACTGATGAACAGGTACTTCAGGATTAGAGTTGTCTAACCCTGCTCTATTCAGATCAACACACTACTGATCTACACTAAATTACACTGGGCTCTGTAACCTTTCAGTGACTGAATAGACTGTGACAGGCAGTGTGTGAGTGGGACGAAGAGGGATGAGGTGGGTTAGTGTCACTTACTTTGGGAATGCACTGTCCTTTGTGAATGCTGAGAGCACAATGTGACTCAGCAGCACCTACTACTCCCACATAGGGGAAGGTGGTGGACTGGACTGTGAAGGATCGCACTTACCACACACACTGCCACCCACCATAATCTGTTAATCTGTCATAGGTCAAACACTTTGATCAGAGGAAGAACGATTAACTCATGGGATATTGTCATTCATATTCATGCTTTCAGTTTCTCATTAGCCATGGGtcatgatatacagtgcctttagaaagtattcagaccccttgactttttccacattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424351 lncRNA downstream 9820 17151652 ~ 17151923 (-) True G373240
TU424330 lncRNA downstream 46207 17115322 ~ 17115536 (-) True G373226
TU424329 lncRNA downstream 46610 17114906 ~ 17115133 (-) True G373225
TU424287 lncRNA downstream 71793 17086536 ~ 17089950 (-) True LOC110523346
TU424290 lncRNA downstream 77979 17071595 ~ 17083764 (-) False LOC110523346
TU424399 lncRNA upstream 52540 17231665 ~ 17231914 (-) True G373285
TU424400 lncRNA upstream 54286 17233411 ~ 17233628 (-) True G373286
TU424402 lncRNA upstream 55898 17235023 ~ 17235225 (-) True G373288
TU424406 lncRNA upstream 56819 17235944 ~ 17239430 (-) True G373289
TU424411 lncRNA upstream 62344 17241469 ~ 17242893 (-) True G373290
XM_021601973.2 mRNA downstream 3665 17153464 ~ 17158078 (-) True LOC110523350
XM_021601312.2 mRNA downstream 11667 17147848 ~ 17150076 (-) True hwa
XM_021601972.2 mRNA downstream 41802 17117368 ~ 17119941 (-) True haus1
XM_021601971.2 mRNA downstream 42178 17117368 ~ 17119565 (-) False haus1
XM_036976959.1 mRNA downstream 52894 17098893 ~ 17108849 (-) True LOC110523345
XM_021601980.2 mRNA upstream 306771 17485896 ~ 17521507 (-) False LOC110523354
XM_036976497.1 mRNA upstream 419783 17598908 ~ 17688319 (-) False nbc
NM_001124325.1 mRNA upstream 422181 17601306 ~ 17688005 (-) True nbc
XM_021601269.2 mRNA upstream 524795 17703920 ~ 17713895 (-) False dck
NM_001165138.2 mRNA upstream 524796 17703921 ~ 17713850 (-) True dck
TU424339 other downstream 35936 17124037 ~ 17125807 (-) True G373228
TU424074 other downstream 219552 16934235 ~ 16942191 (-) True LOC110523341
TU422973 other downstream 1180528 15978502 ~ 15981215 (-) True G372123
TU422972 other downstream 1185627 15975606 ~ 15976116 (-) True G372122
TU422760 other downstream 1463414 15696092 ~ 15698329 (-) True LOC110523302
TU424730 other upstream 309901 17489026 ~ 17521487 (-) True LOC110523354
TU425424 other upstream 823695 18002820 ~ 18003170 (-) True G374189
TU426081 other upstream 1379015 18558140 ~ 18559167 (-) False G374786
TU426079 other upstream 1379114 18558239 ~ 18559167 (-) True G374786
TU429433 other upstream 3514971 20694096 ~ 20694708 (-) True G377800

Expression Profile