RNA id: XM_021601971.2



Basic Information


Item Value
RNA id XM_021601971.2
length 1084
RNA type mRNA
GC content 0.44
exon number 9
gene id haus1
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17117368 ~ 17119941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACATCTCAAACCGGAAGCTGTTGAATGAACGGTGCGCGGGAAACGTTTCGGTTCAGTCAGGATTCCCATTACTTTCAGAAAGCTACTCTCAGCCGAGAGTCAGTCTTTTACTATATTGTTTGTCTGGGCTGCCCGTTGATATGTGTGAAAAGAACAAGAAGGTGAGCAAGTGGCTCAGCACAGTCTTTGGAGATCAAACTATTCCAGAATATGAAGTTAACACACGGACTGTCGACATACTGTACCAGCTTGCAGAAGCAAGTGAAGTTCGATGCAATGAGACTTCCCTGCTTATTGAGGATCAGAAACAGAAAACTTCTGAGTATCAGGCTGATGGTGTTCATCTCCAGAATGTTGTTTTACAAGGAGTGGGCTTATCCTCTGGAAGCTTGTCAAAACCTGCATCAGACTACCTGTCAGCATTGGTGGCAAACGCTAAGGTACTTGGTGTCCGAGACACCTCTCTGAGCAGCTTTGTGCCAGCAGTGAATAACTTGACCAATGAGCTTCTGGAATCTGAAAAGACGGATAGGAGACTTGATAGGGAGCTTAATGCCCTCAGAACTAAACTTGGGTCCGTTCTTGTTCTACGGAAAACCTTCCAAGAGGACATCAAGAAAACAATGAAAGCTCAAGAGGTGGAGAGTGCCAAAGCAGAAGAAAGACTGCTGAATATGGACTTTGTCAAAGCAAAATCCAAAGACCTCTCATACCGAAACAAGAAGGCAGAGGACCAGCTAACATCCAGACACATGGAGAATCGAATCTCCCACCAAGCTCTGATGGAGCTATGTGAGCAAGTCTACACGTTGAAACAAGAAATTCTACCTTTGTCAAAGAAACTCGAACCCTACAGAGATTTGAGCCCAAGTCCATCTCTTGCTCAAGTGAAAATTGAAGAGGCAAAGCGAGAATTGGCTGCAGTTGATGCTGAACTGGAGATGAAGGTGGACTTCATGAATTCCTCCTTGCCTAAAGGGCGGCCTTTAAAATGACACATGAATTTGGGGGATTGTAATTGTAGAAAGTGTATGTAATGATAATAAATGTCAATGAAAATCGTAATGTTTTTCATCCAACTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU424330 lncRNA downstream 1832 17115322 ~ 17115536 (-) True G373226
TU424329 lncRNA downstream 2235 17114906 ~ 17115133 (-) True G373225
TU424287 lncRNA downstream 27418 17086536 ~ 17089950 (-) True LOC110523346
TU424288 lncRNA downstream 33604 17071595 ~ 17083764 (-) False LOC110523346
TU424290 lncRNA downstream 33604 17071595 ~ 17083764 (-) False LOC110523346
TU424351 lncRNA upstream 32087 17151652 ~ 17151923 (-) True G373240
TU424340 lncRNA upstream 42073 17161638 ~ 17163184 (-) True LOC110523351
TU424399 lncRNA upstream 112100 17231665 ~ 17231914 (-) True G373285
TU424400 lncRNA upstream 113846 17233411 ~ 17233628 (-) True G373286
TU424402 lncRNA upstream 115458 17235023 ~ 17235225 (-) True G373288
XM_021601964.2 mRNA downstream 8225 17092271 ~ 17109143 (-) False LOC110523345
XM_036976959.1 mRNA downstream 8519 17098893 ~ 17108849 (-) True LOC110523345
XM_036976960.1 mRNA downstream 8534 17092271 ~ 17108834 (-) False LOC110523345
XM_036976958.1 mRNA downstream 8541 17092271 ~ 17108827 (-) False LOC110523345
XR_005051668.1 mRNA downstream 27331 17075583 ~ 17090037 (-) False LOC110523346
XM_021601312.2 mRNA upstream 28283 17147848 ~ 17150076 (-) True hwa
XM_021601973.2 mRNA upstream 33899 17153464 ~ 17158078 (-) True LOC110523350
XM_021601974.2 mRNA upstream 42178 17161743 ~ 17176980 (-) False LOC110523351
XM_036976963.1 mRNA upstream 42178 17161743 ~ 17178055 (-) False LOC110523351
XM_036976962.1 mRNA upstream 42178 17161743 ~ 17179125 (-) False LOC110523351
TU424074 other downstream 175177 16934235 ~ 16942191 (-) True LOC110523341
TU422973 other downstream 1136153 15978502 ~ 15981215 (-) True G372123
TU422972 other downstream 1141252 15975606 ~ 15976116 (-) True G372122
TU422760 other downstream 1419039 15696092 ~ 15698329 (-) True LOC110523302
TU421988 other downstream 1992579 15123475 ~ 15124789 (-) True G371294
TU424339 other upstream 4472 17124037 ~ 17125807 (-) True G373228
TU424730 other upstream 369461 17489026 ~ 17521487 (-) True LOC110523354
TU425424 other upstream 883255 18002820 ~ 18003170 (-) True G374189
TU426081 other upstream 1438575 18558140 ~ 18559167 (-) False G374786
TU426079 other upstream 1438674 18558239 ~ 18559167 (-) True G374786

Expression Profile