RNA id: XM_021601973.2


Basic Information

Item Value
RNA id XM_021601973.2
length 2342
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110523350
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 17153464 ~ 17158078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACGATTAATTTCTCTGATCATATAGCCTCAAGGGATTGTTCAATCCAATGGTCCATGTCAGGGGGATTAAATAGCCTCTAGGGATGTCTATCTGTCAGTCAGTCTTCAGTCGACAACCCTCGACAGCTCTGAGGATTCACCTCACTGGTCGTGACTGTTCCATGAGCTTCTGCTCAGAATTCCGGAAACGAGCCTCaagaaggagaaggaggctgTTACATCCGCGTGATAATGCTGCGAACACCAATGGTCTCTAGGAGAAATCGGTAGGCACGGTATTCCCTCTTGTGCGTATGAAAATGGGCGGGTTTTGGGAAAGCTCAGTCACGCTGCGTGGGTGGTGAGTGTATAGTAAAGGGCTGCGGCGGCGGTATATAGCACAGTCTGCAGTCAGCGGTTCAGTCAACCAACAGCTCAAGCACAGCTAAAACAGCTAAGAAACGTTCAGCACCACAGAACAGCGGACAGCTCCTCAATAAGAGAACACTATGGTTCTGATCTGGACACAGTTTGGAGTGAAAACCAAAAATGTCAAGTGCAAGGTCCGCGTTATGAACAGGAATGACAGCTCGGGCTCTTCATCAGGGGAGAACCAAAAGGACCAAGAGGTGCCTGTTATGTCCATCAAGCCTATGGGGAAGGATTTCTACAAGGTCCTGGGCGTGGAGACAGACTCCAACGAAGATGAGATCAAGAAGGGATACAGGAAGATGGCCCTAAAGTTTCACCCCGACAAGAACAGCGCCGCTGACGCCGCAGACAAGTTCAAGGAGATCGCAGAAGCTTACGAGATTCTGACCGACCCCAAGAAGAGAGTCATCTATGATCAGTTTGGAGAAGAAGGTCTTAAGAACGGAGGCGGAGTGTCCATGGCAGGCAAGGAGAACAACACCCATCAGTACAGTTACCACGGTGACGCCCATGCCACATTCTCCTCCTTCTTCCAAGGTTCCGACCACTTCGACATCTTCTTCGGGCCCGACGGCGAGGAGGAGCTCTTCAACCCCTTCAGCCGCTTCACCTTCAGCCACGTCGGTGGTTACCACAGTAACTATGGCCCCACTGGCGAGAAGCTTCGGCGCGGACGTCGGCGTCTGCAAGGCATGGCGGTGGTGCACGACCTCCTGGTGACCCTGGAAGAGGTGTTCCATGGCTGCACCAAGCACATGAAGATCACTCGGCGCCGTCTCAACCCGGACGGCCGCAGCCTGCGCACCGAGGACAAGGTCCTGAACGTGGTGGTAAAGAAGGGGTGGAAGGAAGGTACCAAGATCACCTTCCCCAGAGAGGGCGATGAGACGCCCAACAACATACCCGCCGACGTGGCCTTCGTTCTCAAGGACAAGAAACACCCCCACTACAAGAGGGATGGGTCCCACATTGTGTATACAGCCAAGATCACCCTCAAAGAAGCTCTATGTGGATGCACAGTCAACGTCCCCACCCTGGACAACAGGACGATGCCGCTGCCGTGCAGTGATGTCATCAAGCCCGGCGGCATCCGGCGGCTGAGGGGCGAGGGCCTGCCCCACGCCAAGACCCCGTCCACACGTGGCGACCTGGTGGTGGAATTCCAGGTGGCCTTCCCTGACAGGATCCCTCCCCAGTCCAAAGAGATCATCAAACACAGCCTCGCTGGGTGCTAATGGGCTAACGTCCTAGCATGCTATTGTGCTAACGACCTACTGTTTGAGCTAATAAAATCACAGCCTTGCCAGGTGCTGTGACAATccagcacagcttctccctgtgctCGGTTTAGAGACAATGGCAGAGGGCACCGGAGAGGGTCAGATGGAAGCTTTTTTGATTATAGGCACTTTTCATAAGCATATTTAACAGATACAATGCCACAAGTAGAAAGGTTTACAGTTTAACTGGCAAATGGACTCCTGAGTGTCTGGGCACATCTACTGACTTTCTCTTGAATGAAAAGGGAATAGGTACTGTTACTGTGTATACTGCTTGCCTATATCAGGAACTTGGTATTCCAATCGAGTCATTTGACTTATTACAGAAACCTGAGGTAGTTGATAGTCACGTGACAAAATGATTCTACCACTTGTAGGCTATGGTTGTATGGTTTTCATATGACTGCACCTTTACATTGATTTATTACAATAACAAATATGTACTTGTGTACAAGAGTGTACTTGTGTACAAAAATATTTATAACTTTGTCTCTAAAAGAGATTCCTCTGTCAAATGTTCAACTGAATCATTTGAAATGTTTGTGTATATATGTGCTTTAACTTATACCAGATGTTAATGTATTATTGGAAATTGACAAATGGACACAAAGAAAAGCatgttaaataaatgaaaatagCAGAATTTTAA

Function

GO: NA

KEGG:

id description
K09511 DNAJB5; DnaJ homolog subfamily B member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424351 lncRNA downstream 1541 17151652 ~ 17151923 (-) True G373240
TU424330 lncRNA downstream 37928 17115322 ~ 17115536 (-) True G373226
TU424329 lncRNA downstream 38331 17114906 ~ 17115133 (-) True G373225
TU424287 lncRNA downstream 63514 17086536 ~ 17089950 (-) True LOC110523346
TU424288 lncRNA downstream 69700 17071595 ~ 17083764 (-) False LOC110523346
TU424340 lncRNA upstream 3560 17161638 ~ 17163184 (-) True LOC110523351
TU424399 lncRNA upstream 73587 17231665 ~ 17231914 (-) True G373285
TU424400 lncRNA upstream 75333 17233411 ~ 17233628 (-) True G373286
TU424402 lncRNA upstream 76945 17235023 ~ 17235225 (-) True G373288
TU424406 lncRNA upstream 77866 17235944 ~ 17239430 (-) True G373289
XM_021601312.2 mRNA downstream 3388 17147848 ~ 17150076 (-) True hwa
XM_021601972.2 mRNA downstream 33523 17117368 ~ 17119941 (-) True haus1
XM_021601971.2 mRNA downstream 33899 17117368 ~ 17119565 (-) False haus1
XM_021601964.2 mRNA downstream 44321 17092271 ~ 17109143 (-) False LOC110523345
XM_036976959.1 mRNA downstream 44615 17098893 ~ 17108849 (-) True LOC110523345
XM_021601974.2 mRNA upstream 3665 17161743 ~ 17176980 (-) False LOC110523351
XM_036976963.1 mRNA upstream 3665 17161743 ~ 17178055 (-) False LOC110523351
XM_036976962.1 mRNA upstream 3665 17161743 ~ 17179125 (-) False LOC110523351
XM_021601980.2 mRNA upstream 327818 17485896 ~ 17521507 (-) False LOC110523354
XM_036976497.1 mRNA upstream 440830 17598908 ~ 17688319 (-) False nbc
TU424339 other downstream 27657 17124037 ~ 17125807 (-) True G373228
TU424074 other downstream 211273 16934235 ~ 16942191 (-) True LOC110523341
TU422973 other downstream 1172249 15978502 ~ 15981215 (-) True G372123
TU422972 other downstream 1177348 15975606 ~ 15976116 (-) True G372122
TU422760 other downstream 1455135 15696092 ~ 15698329 (-) True LOC110523302
TU424730 other upstream 330948 17489026 ~ 17521487 (-) True LOC110523354
TU425424 other upstream 844742 18002820 ~ 18003170 (-) True G374189
TU426081 other upstream 1400062 18558140 ~ 18559167 (-) False G374786
TU426079 other upstream 1400161 18558239 ~ 18559167 (-) True G374786
TU429433 other upstream 3536018 20694096 ~ 20694708 (-) True G377800

Expression Profile