RNA id: XM_021602047.2


Basic Information

Item Value
RNA id XM_021602047.2
length 2969
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110523384
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19507723 ~ 19559754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTAAATCAAATGCATTTGGTCAACAATTAGTTAGTTATCCATGTTAACAAACGTTAGCGCTTGTACCTATTTGCTAGCCAGcgtatagctagctaacgttagcatgctagctatGACACTCCTGACGTGCAAACCGATATTTAACGTTATTTTCAGGATTTGTTCAAATTAtttaggttagggtcagggttaatggTTTTGGCTAGTTGGTTTGCACGTAAGAGTATCCGTATAGCCCTTCCCTTTCAACGTACATGCTTGCTAGCTACCTAATTCAACGTCAAGAAACCTGACTGTCATCCCAAACTTCAGGTTACAAGTCTCAAGTGATGGCTTCGTTCGGCTGGAAGAGGAAAGTGGGCGAGCGGGTGTGCAAGGCAGCGGTGCAGCAGTTTGAAGCCGCGGCGGAGAagccagaggaggatggagtgGACGAGGTGGACTGGCTACATGCTATCAAGCGGCGCCGTGATGCCCTCCTGGAGGACTGCGCTGCGAAGGGAAACAGGCTGAAGGAGGAGGGGACGGTGCTGGCACAAGAGGGCAGACACTGGGAGGCCATTAAGAGATGGGATGAAGCCATCCAGCTGACTCCAGACAACCCTCTACTGTACGAGATGAAGTCCCAGGTGCTGACCATTCTGCAGGAGGTGTTCCCAGCAGTGCAGGCAGCAGAGATGGCTGTGAAGCTCCGCCCCCTGTGGTGGGAGGGCTGGCAGACACTAGGCCGTGCCCAGCTCAGTCTGGGTGAGGTGGACCTGGCGGTGAGGTCCTTCCAGGTAGCGGTCCACCTGTGTCCGTCAGAGCGCCCCCTCTGGTCGGATGACCTGGCGTGGGCGCGGCAGCTGCTGCAGCAGAGACGGACggcccagaaccagacccagcgGGAGGAGGAGGCCCAACGGGATGTCCTGAACCCTCCAGAGCTCCAGCAGGACTACGACTTTGAGTCAGACGAGGTGGTGGTGGCCTGCGCTGCCGTAGCCGAGAGACAGAGACGCTATGAGGAACTGAAGAGGACAGTCGTGGTTGTCGACGCTGAGGGGAATTCTAGGGAGATACCTGTGGAGGAGGCGGGGTCAGGGGACATACCCTCTTCATCACAGGATCAGTTGGTCAAAGCACGGGGACTATGATCTGTCTCTAAGGACTTATGGGCTAGAATGGATCTTATGGACTGAAATgggtgtttttgttgttttgagtcTTTAGTCTTATGCATGTCATTATGGTTTTCTGCTTTAGTCTACAACAGACTGTGGGTGATAGAGGTAGATTTAATCAAAtagatttttgttttagtgtGTTATGTTTTCACTATTTATCAATGCTCTCATATTACTGGCATTTAAAAGACTGAATTTGAGCGTAGCCAAAAATAATTATCATCATCATTTGGCACTCAAGAGGTCAATTGTCACTCATGTTGATTAATCCTCCTCCTGAAAAGAGGATCCCGTTGTGTTTTTGAATATGTCTGTCAGTCCCATTTCTTAGACACATTCAGGGCCGGTTTCCCCAGACACAGATTtaacctagtcctggactaaaaagctttTCACTGGAGACTCTCTATTGAGCTTGCTTTTCCATCCAGGACCAGGCTTACTGTGTCCGGGAAACTGCCCCTTAGTCTTTTGAAATGTCTATGAGAACATTTGTCAGATGACCGGAAAATATCTCCCTGGAAAACTCCTCTCACTTGAGTCTATCAGTCAAGCTGTTATTAAAAAAGTTTTCGAATTGCAGTTTCATGCAACATAAAGTCGCAGTTGGAAGTGCTATTTCATAATGACTAACGGACTGGTCTTATCAGTTGGGAAACTCTGTCTCCACGGTAACTCAGAGAAATAAACCCCACAGAGAAATAATATTGCATGTGTATTCCCAGAATTCCAGCTGAGTGTTAGGATTTGTGTGTCATATGACCCTCCATAGGGGACAGGTGAGCTGCTAAAACAATATATCCACCTTGGCCCTGAAATCTAGCAGCTGGATAGCGCTGAAAGCTCTGTGCAGTCAGCCTGGACTGGCCATGCTGAAAAGCCTAGAAGCTAGAACAGTCATTGAATTTGAATGGCATCTTCTAATAACAAGATTGTTTTCATGGGACACTCAAGGGGTTTTGTATGACTAAAACAGGCTATCAGATTTAGGGCTTTATTATTGCCGATATTAAAGAGAGGCGCTGTGAAAGGATTCATGTATCCTCGTCTTTATTAAAATCATATTAAGACCATTTTGTCATCGGTATCTCTCAAATATATTTCCTAATAGTACAGCGTTAAAAGGAGTTTTCTGACAGAGGGAACTGGCCTCGTAGAACATGAACGTCCGGGGATGCTTTAGGATTTAAATAGGGCATTACACGTCAGGAACATTTTGTCAATACAAATCATTAGACAATGAATTGTTATTGGTAAAGAACTACAAACAGTGCCTATGTCATTGTAACTGGAATTTGGTAGGATATGTGTTTTGGTCATCACTACAATAGAAGTAGGCAAAAAAGCAGCAACTATGGGTAAAAGCAGACCTGGTTCTCTCAACAAGTCAACCACACTGAGGGTACGTGTTGTGTTTACAGTGCAAACATCTGCTGATGTTGCCAAAGCCATTCAAATCATTTAAACACCTGGCACAAAAATTCTCAAAACAAGTCTGGAGCATAAGATTGTGGTAGCGTCTCAAAATAGGGCCTGAATGTGTTTGTAACAATAATTCATTTTATACGACTTGAGTTCATTCACTGGTAATGTGGGGGACGATAGGAGCTGTAAACAAATAGtgggagagggaacaactgtttAGACCATGAGAATGCTCATGTATAATGTGAGTTATATTGATGTTTCTATAACTGACCCAGCTGATGTCGTAATACTTTGTTCTGTAAATAATGAGAAAATGGATCCGTTTTACCTGTAATGTGTCAATTGAAAATAAATCAATTGGTTACAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427285 lncRNA downstream 13607 19495942 ~ 19496458 (-) True G375821
TU427161 lncRNA downstream 20343 19489521 ~ 19489722 (-) True G375720
TU427152 lncRNA downstream 24691 19485149 ~ 19485374 (-) True G375711
TU427124 lncRNA downstream 43479 19466309 ~ 19466586 (-) True G375683
TU427119 lncRNA downstream 47042 19462761 ~ 19463023 (-) True G375678
TU427280 lncRNA upstream 30250 19589895 ~ 19590137 (-) True G375817
TU427475 lncRNA upstream 61425 19621070 ~ 19622183 (-) True LOC110523381
TU427607 lncRNA upstream 269592 19829237 ~ 19829453 (-) True G376129
TU427723 lncRNA upstream 353574 19913219 ~ 19913484 (-) True G376241
TU427728 lncRNA upstream 355546 19915191 ~ 19915408 (-) True G376246
XM_021602041.2 mRNA downstream 81251 19396185 ~ 19428814 (-) True LOC110523380
XM_021602039.2 mRNA downstream 134830 19363387 ~ 19375235 (-) True LOC110523379
XM_036977007.1 mRNA downstream 175041 19214846 ~ 19335024 (-) True LOC110523375
XR_005051971.1 mRNA downstream 305399 19204538 ~ 19204666 (-) True LOC118964778
XM_036977006.1 mRNA downstream 411595 18974930 ~ 19098470 (-) True LOC110522815
XM_021602044.2 mRNA upstream 2234 19561879 ~ 19580316 (-) True LOC110523382
XM_021602051.2 mRNA upstream 30499 19590144 ~ 19618068 (-) False LOC110523387
XM_021602052.2 mRNA upstream 30499 19590144 ~ 19618068 (-) False LOC110523387
XM_036977010.1 mRNA upstream 30499 19590144 ~ 19618069 (-) True LOC110523387
XM_036977011.1 mRNA upstream 61380 19621025 ~ 19825534 (-) False LOC110523381
TU426081 other downstream 950898 18558140 ~ 18559167 (-) False G374786
TU426079 other downstream 950898 18558239 ~ 18559167 (-) True G374786
TU425424 other downstream 1506895 18002820 ~ 18003170 (-) True G374189
TU424730 other downstream 1988578 17489026 ~ 17521487 (-) True LOC110523354
TU424339 other downstream 2384258 17124037 ~ 17125807 (-) True G373228
TU429433 other upstream 1134451 20694096 ~ 20694708 (-) True G377800
TU429442 other upstream 1144968 20704613 ~ 20705140 (-) True G377809
TU429645 other upstream 1469813 21029458 ~ 21029783 (-) True G377991
TU430076 other upstream 2232017 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 2617620 22177265 ~ 22179313 (-) True LOC110523434

Expression Profile