RNA id: TU427285


Basic Information

Item Value
RNA id TU427285
length 517
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G375821
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19495942 ~ 19496458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaatacttttttcacctcttccacactcactacGGAATTCAAatttacaatgcttgtctttcataatttggtcagttatactTCTATGTGTAGGTTcggcgtttgttgctggcatgtcatgcctaaatttgccaatcttgtcaatttaaaaaatcattaacctctagtgacaccccatcccgtgaacgggaccgttgtcatcatctgacactaattagcataacgcaacggacataaatcttcctagaaaatattcctattcatgaaaatcacaagtgaaatatattggaacacagcttagccttttgttaatcaccctgtcatctcagattttcaaaatatgctttacagccaaagctagacaagcatttgtgtaagtttatcgatagcctagcatagcattatgccctgctagcagcaggcaaccttgtcacgaaaatcagaaaagcaatcaaattaaatcgtttacctttgatgaacttcagatggtttcactcacgagactcccaggtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427161 lncRNA downstream 6220 19489521 ~ 19489722 (-) True G375720
TU427152 lncRNA downstream 10568 19485149 ~ 19485374 (-) True G375711
TU427124 lncRNA downstream 29356 19466309 ~ 19466586 (-) True G375683
TU427119 lncRNA downstream 32919 19462761 ~ 19463023 (-) True G375678
TU427040 lncRNA downstream 113490 19382162 ~ 19382452 (-) True G375601
TU427278 lncRNA upstream 27927 19524385 ~ 19588360 (-) True G375815
TU427280 lncRNA upstream 93437 19589895 ~ 19590137 (-) True G375817
TU427475 lncRNA upstream 124612 19621070 ~ 19622183 (-) True LOC110523381
TU427607 lncRNA upstream 332779 19829237 ~ 19829453 (-) True G376129
TU427723 lncRNA upstream 416761 19913219 ~ 19913484 (-) True G376241
XM_021602041.2 mRNA downstream 67128 19396185 ~ 19428814 (-) True LOC110523380
XM_021602039.2 mRNA downstream 120707 19363387 ~ 19375235 (-) True LOC110523379
XM_036977007.1 mRNA downstream 160918 19214846 ~ 19335024 (-) True LOC110523375
XR_005051971.1 mRNA downstream 291276 19204538 ~ 19204666 (-) True LOC118964778
XM_036977006.1 mRNA downstream 397472 18974930 ~ 19098470 (-) True LOC110522815
XR_005051678.1 mRNA upstream 11265 19507723 ~ 19520161 (-) False LOC110523384
XM_036977008.1 mRNA upstream 13607 19510065 ~ 19520161 (-) False LOC110523384
XM_021602047.2 mRNA upstream 13607 19510065 ~ 19559645 (-) False LOC110523384
XM_021602046.2 mRNA upstream 13607 19510065 ~ 19559754 (-) False LOC110523384
XM_021602049.2 mRNA upstream 13607 19510065 ~ 19559754 (-) False LOC110523384
TU426081 other downstream 936775 18558140 ~ 18559167 (-) False G374786
TU426079 other downstream 936775 18558239 ~ 18559167 (-) True G374786
TU425424 other downstream 1492772 18002820 ~ 18003170 (-) True G374189
TU424730 other downstream 1974455 17489026 ~ 17521487 (-) True LOC110523354
TU424339 other downstream 2370135 17124037 ~ 17125807 (-) True G373228
TU429433 other upstream 1197638 20694096 ~ 20694708 (-) True G377800
TU429442 other upstream 1208155 20704613 ~ 20705140 (-) True G377809
TU429645 other upstream 1533000 21029458 ~ 21029783 (-) True G377991
TU430076 other upstream 2295204 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 2680807 22177265 ~ 22179313 (-) True LOC110523434

Expression Profile