RNA id: TU427278


Basic Information

Item Value
RNA id TU427278
length 603
lncRNA type read_through
GC content 0.36
exon number 2
gene id G375815
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19524385 ~ 19588360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatacttttttgccccactatgtgTAATGTGTTGATGCAAAGATTGTGTGTCAACAACTCATCTGTTATGAAGCGGTCTGCGTGTCTGGATACTAGTGAATTTATCAGTGGTCCTGTTTTATCATGATTTCAATATAGTATTAATTGTTTTACAGATGTAATCAATTCGGTATAGTTGTAGTCAGTGATGCAGTGTAGGGTAAACGCCATTTACACAACTTTTGCAAAAAAATTAAAGGAATAGGAAGCACTACTTTTTTCACTGTGACCGGCAATAAGTTTACAcacctatttatttttttactggtTGTGTTTAGAGGGTTTGTAAGGGAAAATTGCTTGAACAGTTATTAGGGAAACTAACCCAAGTCATTCAGATATTATTTTACCTCTCCCTCATTTTACTCCCCCCACCAAATGATCTAGTTCCTCTTTTAGATTTGATATTTTTAATCGTGTGAAAGTACCATGCTGGTTATGAAGCACAAGGAATAAAAAGAGCACTGTTTTTGGAAAACCTTTCATATACAGTTGTCAAGATCATCCCACATGATGGATTGTTGCCATGCTGCAGACTCTGCTTGGTCATTGTCAGGGGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427285 lncRNA downstream 27927 19495942 ~ 19496458 (-) True G375821
TU427161 lncRNA downstream 34663 19489521 ~ 19489722 (-) True G375720
TU427152 lncRNA downstream 39011 19485149 ~ 19485374 (-) True G375711
TU427124 lncRNA downstream 57799 19466309 ~ 19466586 (-) True G375683
TU427119 lncRNA downstream 61362 19462761 ~ 19463023 (-) True G375678
TU427280 lncRNA upstream 1535 19589895 ~ 19590137 (-) True G375817
TU427475 lncRNA upstream 32710 19621070 ~ 19622183 (-) True LOC110523381
TU427607 lncRNA upstream 240877 19829237 ~ 19829453 (-) True G376129
TU427723 lncRNA upstream 324859 19913219 ~ 19913484 (-) True G376241
TU427728 lncRNA upstream 326831 19915191 ~ 19915408 (-) True G376246
XR_005051678.1 mRNA downstream 4224 19507723 ~ 19520161 (-) False LOC110523384
XM_036977008.1 mRNA downstream 4224 19510065 ~ 19520161 (-) False LOC110523384
XM_021602041.2 mRNA downstream 95571 19396185 ~ 19428814 (-) True LOC110523380
XM_021602039.2 mRNA downstream 149150 19363387 ~ 19375235 (-) True LOC110523379
XM_036977007.1 mRNA downstream 189361 19214846 ~ 19335024 (-) True LOC110523375
XM_021602051.2 mRNA upstream 1784 19590144 ~ 19618068 (-) False LOC110523387
XM_021602052.2 mRNA upstream 1784 19590144 ~ 19618068 (-) False LOC110523387
XM_036977010.1 mRNA upstream 1784 19590144 ~ 19618069 (-) True LOC110523387
XM_036977011.1 mRNA upstream 32665 19621025 ~ 19825534 (-) False LOC110523381
XR_002473444.2 mRNA upstream 455883 20044243 ~ 20051842 (-) True LOC110523392
TU426081 other downstream 965218 18558140 ~ 18559167 (-) False G374786
TU426079 other downstream 965218 18558239 ~ 18559167 (-) True G374786
TU425424 other downstream 1521215 18002820 ~ 18003170 (-) True G374189
TU424730 other downstream 2002898 17489026 ~ 17521487 (-) True LOC110523354
TU424339 other downstream 2398578 17124037 ~ 17125807 (-) True G373228
TU429433 other upstream 1105736 20694096 ~ 20694708 (-) True G377800
TU429442 other upstream 1116253 20704613 ~ 20705140 (-) True G377809
TU429645 other upstream 1441098 21029458 ~ 21029783 (-) True G377991
TU430076 other upstream 2203302 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 2588905 22177265 ~ 22179313 (-) True LOC110523434

Expression Profile