RNA id: TCONS_00030976



Basic Information


Item Value
RNA id TCONS_00030976
length 373
RNA type processed_transcript
GC content 0.52
exon number 2
gene id XLOC_015486
representative True

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27000542 ~ 27010345 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTAGACGCGCGGAGTGTGAGCGAGCAGCGCAGAGATTGAGCGGAACGGAGGGAAAGACGCCTGTAGTGCAAGGATGCTCCTGAATATGTTTCCTTCACTCATTCGGGAAGAGCGCGTCTAGAGCGGCGGAGACGTGACGGAATCCTTTCCTGCGTTTTCTCATGAACATTTACAATTTATAGGCACGAGAAGGACAAGAGATAAAGGTTTGAGGGCTTCAACTACAATCATCGTTCATTCCTGTGGTCTCTCCCATCAATCACCGGTCAGACGGTCTGGTCTGTCTGGCTGCCCGTGCCAGTGCTGAGGGTGGTGCATCATTTCCAAGGAGCCAACTATTCACCTTAAGATCTCTGCAGTCCGTTCAGTACGG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140059

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033264 lncRNA upstream 258336 26741436 ~ 26742206 (+) True XLOC_015485
TCONS_00033551 lncRNA upstream 258915 26721068 ~ 26741627 (+) False XLOC_015485
TCONS_00030972 lncRNA upstream 320330 26677117 ~ 26680212 (+) True XLOC_015482
TCONS_00030966 lncRNA upstream 348271 26647473 ~ 26652271 (+) False XLOC_015481
TCONS_00033550 lncRNA upstream 405124 26592695 ~ 26595418 (+) True XLOC_015479
TCONS_00030978 lncRNA downstream 34825 27045170 ~ 27049566 (+) True XLOC_015487
TCONS_00030979 lncRNA downstream 207804 27218149 ~ 27242711 (+) True XLOC_015488
TCONS_00030986 lncRNA downstream 384511 27394856 ~ 27399001 (+) False XLOC_015492
TCONS_00030989 lncRNA downstream 393050 27403395 ~ 27404189 (+) True XLOC_015493
TCONS_00031000 lncRNA downstream 965209 27975554 ~ 28038625 (+) True XLOC_015500
TCONS_00030973 mRNA upstream 311634 26682913 ~ 26688908 (+) False XLOC_015484
TCONS_00030974 mRNA upstream 313675 26682946 ~ 26686867 (+) False XLOC_015484
TCONS_00030975 mRNA upstream 315779 26682952 ~ 26684763 (+) True XLOC_015484
TCONS_00030970 mRNA upstream 318360 26656290 ~ 26682182 (+) False XLOC_015482
TCONS_00030968 mRNA upstream 320458 26655744 ~ 26680084 (+) False XLOC_015482
TCONS_00030977 mRNA downstream 94 27010439 ~ 27094653 (+) False XLOC_015487
TCONS_00030981 mRNA downstream 320116 27330461 ~ 27378378 (+) False XLOC_015490
TCONS_00030982 mRNA downstream 331214 27341559 ~ 27380161 (+) True XLOC_015490
TCONS_00030983 mRNA downstream 376272 27386617 ~ 27391558 (+) True XLOC_015491
TCONS_00030984 mRNA downstream 384453 27394798 ~ 27401105 (+) False XLOC_015492
TCONS_00030971 other upstream 327695 26667680 ~ 26672847 (+) True XLOC_015483
TCONS_00030963 other upstream 498642 26501768 ~ 26501900 (+) True XLOC_015477
TCONS_00030959 other upstream 499237 26498562 ~ 26501305 (+) False XLOC_015477
TCONS_00030958 other upstream 499267 26498561 ~ 26501275 (+) False XLOC_015477
TCONS_00030980 other downstream 310669 27321014 ~ 27324181 (+) True XLOC_015489
TCONS_00030985 other downstream 384495 27394840 ~ 27400917 (+) False XLOC_015492
TCONS_00030997 other downstream 847343 27857688 ~ 27858834 (+) True XLOC_015497
TCONS_00031016 other downstream 2836047 29846392 ~ 29864340 (+) False XLOC_015512
TCONS_00031038 other downstream 3258961 30269306 ~ 30270163 (+) True XLOC_015523

Expression Profile


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