RNA id: XM_036978016.1


Basic Information

Item Value
RNA id XM_036978016.1
length 5868
RNA type mRNA
GC content 0.56
exon number 16
gene id LOC110522983
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61304113 ~ 61511078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctttctcccttcGCTGATTTGAATAGCGGGACTCTGCAGAGAGAATCTGCGCTCTTTTGTTCAGTAGCACTTGGCTGCCAGGGAGGTGAGAATCGTTGTAGCTCTCCTCATCACGTTtcgtctgtctctcttctctttgcGCAATAGGACGGACACCAGATACCCCGTTATTGTGTTTTGGACCTCTCCAAAACGCGATTCGTTCTTTTTTCCAACTCTTTATACGGTTTTGGTGCGCTCGATGGCTCGCACTGCTGACTGTGGCTCGTGACTAACAGAACACCTGCACGGAATCAGACCAACGTTAGACAATCGCTCTACATTCCTGAGGACTTGACAGAGACATCAGAGCGGCTCACGGTCACCTCCTCCTAAAAGgtccagGATGCTGGGTGCGGTGGTCCCTGTCTGTGGACTGCAGGCTCTCCTGACggccctcctgctctctctgggCTATGgcTTGGTGTGGTCAGACCCGGTGGTGAACATGAGGAAGGTGACCCACCAGAGGGTGAGGGAGCAGCTGGCCAACACCGTCCTGCTGCCCTGTGTCTTCACCCTGCGCCCCACCCCTACCCACGAGCCCCCCCGCATCAAGTGGACCAAGGtgtggggacagaggggtgacGATGGTCGGCAGAGGGAACAGTCCATCCTGGTCGCCAAGTACAACGTAGTCAAGGTTAAGAAGGCATTCCAGGGGCGTGTCACCCTGCCCGGTTACCAGGACAACCGTTACAACGCCAGCCTGGCGCTCAGCGGTCTGCGCTCCAGTGACTCGGGCATGTACCGCTGTGAGGTGGTAGTGGGCATCAACGACGAACAGGACACCGTGCCCCTGGAGGTTACAGGTGTGTTGTTCCACTACCGTGCCCCCCACGACCGCTACGCCCTGTCCTTCCCCGACGCCCAGCGGGTGTGTCTGGAGAACTCGGCTGTCATCGCCACGCCTGCTCAGCTCCAGGCCACCTTTGCCGACGGGTATGACAACTGTGATGCCGGCTGGCTCTCTGACCAGAGCGTGAGgTACCCTATCCAGTCTCCCAGGCCTGGTTGCTATGGCGACAGGCAGGACTCACCTGGAGTGCGCAACTACGGCAATCGGGCCCCTGACGAGCTGTTTGATGTCTACTGCTTTTCCAAGCAACTGCAAGGTGAGGTGTTCCACTTGTCTGTACCAGAGAAGCTGAGCCTGGCCACAGCCTCTACCCACTGCCACGCTCTAAATGCTCAGCTGGCCACGGCAGGGCAGCTCTACCTAGCTTGGCAGGCCGGCCTGGACCAGTGTGACCCAGGTTGGCTGGCTGACGGCAGCGTGCGCTACCCTATAAACCTTCCCCGGCGCAACTGTGGCGGGGATGATCCGGGGGTGCGCACTGTCTACCACAACCCCAACCGCACCGGTTTCCCAGTAACCACCACCCGCTTCGACGCCTACTGCTACCGAGAACGTGATGCAGGAGTCCAGGCAGCTCAGCCAGGGTTCCTCCAATACAGAGAGCCAGAGAACAACTCATCAGACACTGAGCCCCAGCGCTCTGACCCCTTCCCCAAACCCTCCACCTGGACTGGCATCGTGGACCTGGACAAGGAGGGAATCAGCTCCATCGCTAGAGGCAACGAGTCCTCTGAGATCTCAGAGGAGCACGTGGTAATCCACCTCCAGCCAGGGGAGGGTACCCAGCGCTGGGGAGAGGAGAACCAGGAGACCCAGGACCGATCCAAAACTGGAGCCCCTCAGGACGCCTCCTCCAGCCCTAAGACCAAGACCAGTACCCTGAGTCTGTCTGCCCTGGAGAGTCTGGAGACCCACGGAGGTTCTGcccaggaggaggtggagggtgaggGGGAAGTGGAGGGGCGTTTCGGGTCGTCCGACTCCCCTCTTTCCTCCCAGACCTCTCCAACGCTCCAGGCTCAGACTGCCAATAGCGTTCTCCACAGCTTCGTCAACAACCTGATGAATCCCTTCAAGTATTGGACAGGCTCTGTGGAGACCGACACAGAGGCCCCTCCCCCAGCCACACCTGCCTCACTGCCCGAGGGGACATTATCTGTGGCAGACCAGGAACCCCCAGGGTCGGCTAAGGTCAACCCCACCGAAGGGAGGCCCAATCTTGGCAGCAAAGGAAGCACTGACAGCGGCGTCATGGAGCATCGGAGTGGAGGCTCCTCGCTCAAGACATCCACCGGTGGGCTCACCAGCTCAGAGGAGGGTCTAACTGAGCAGGAGAAAGAGGTGGTCCCATTTGGCCCTGTGATCCTGTACACACAGCCAGGGAGGGATCCAAGCACATCCCTAACCAACCCTTCAGCCTCCTCATCTAATGGATTCACAGAACTGGGGCCCGGTGGTAGTAGCAAGACTGTGGAGGCTTTGAATGTATCAGGAGGCCCCCACCATGGCACCAGGTATGAGCTGGCTTCATCCCCAGGGGCCCCGGCACAAGCCACAGGCAGCCAGCTGAGATGGGCCCTCAAGGCCATGAAGGGTTCTAAGCTTGTGCCGGAGGGACACATGGCGTACGTGGGGAAGGATTCCACCTGGGAGCCAATGGAGGCCAAAGCAGGGCCCCTGGAGGTCATGACCCTGCCAACCAGCCCAGAGAACTACTCTGGCGAGGGGAGGGACCAGGATGAGGACCACAGCATCCCCCATGACGTcctagaaagagaggagggggataaagagacagagacggagggaAGCGGGAGAGGAGTGAACGACTTACCAAGAGGCTTTGGATCTAACGGTAACAGCAATCCAGCCAGCGGTGCCAGCAGCAGCACAAAGCCTCCTGTGTCTGGACTGAAACCCACCCAGACCCAAACCCAGAGCCAGACAGTAGCAGAACACACCACTATCTCCCAGTGGCAGCTGGTGGACCAGCCCACCACCTCACCTGcagctgctgcttctgctgcaGGCTCCAGCCAGGGCCCAGGGGGAACCGTTGAGGAGGCCAGGGGAGAGATTGTCTATGTCCGACGCCCCACTGAGAAACTGCTTCCAGCCACCTCCAGTAAGAAagatggcttctcccctgtgatCAGGAAGCAGAACCTGAACACAACCAGAGTGACTGAGAGACAACGCAGCCTAGATGAGGCCACCACACCTGGGGTTACCTCCAGACCTGCAGCCCCTATGGAGCCCCTGACCACCATCAAAACCTCCACAGCAGACACCCAGAGAACAGATTCCACCAGGGAGCCTCCTATCTCCATCATATGGGTtccggtggagagagagaagacaatcAGTACCACACCTCTGACCAGAGATGGACCACAAACGGCCACAGCTTCCACTCAGTTGACCACGCCATTGTCCATTCTGAAGAGCAGCGATCGTGAGGCCGAGTCCAGGTTGGCCGTTTCAGAGTCATTCGTGGTTGGAAAAGGGTGGAAGCCTTTGGGAGGGAGGAACCCCAAATCTAAGGAGGACAAAACCCTTGTGAtcacagagaagacagagaagaacccttttggtgtCATTGTGCCCACCTGGGGCTATGACCTCAACCCTTCAGCTGAAGACAACCCGTGCCAGACCAACCCCTGTCTGCATGGAGGCAGCTGCCTGCCGGAGGGCGACGGCTACAGCTGCTACTGCCCCCAGGGCTACTCTGGAGAGAGCTGTGAGATCGACATCGACGACTGCCAGTCCAACCCGTGTCAGAACGGAGGCACCTGCATCGATGAGATCAACTCCTTCGTGTGCCTGTGTCTGCCCAGCTACGGTGGAGCCACGTGTGAGAAAGACACAGAGGGCTGTGAACACACATGGAGGAAGTTCCATGGCCACTGCTACAGGTACTTCAGCCGCAGACACACCTGGGAGGATGCAGAGAAGGACTGCAGGGAGCACAGCGGACACCTGGCCAGCATACACACACTCCAGGAGCAGGACTTCATCAACGGTCTGAGTCATGACAACACCTGGATTGGACTGAacgacagaacagtggaagaggaTTTCCAGTGGACTGACAACATGGAcctgCAATATGAGAACTGGCGGGAGAACCAGCCGGACAACTTCTTTGCGGGTGGAGAGGACTGTGTGGTGATGATCGCCCACGAGAACGGCAAGTGGAACGACGTGCCCTGCAACTACAACCTGCCCTACGTCTGCAAGAAGGGAAcagTGCTGTGTGTCAACCCTCCCACCGTGAAGAACGCCTTTCTGATTGGTCGTAAGCGGTCCCACTATGACATCCACTCAGTGGTGCGTTACCAGTGTGCCGACGGGTTTCTCCAACGCCACGTCCCCACGGCCAAGTGTCGTGCCAACGGCAAATGGGAGCGGCCGAAAATCATCTGCACTATGACCCGGGGAGCACAGCGCTACAGGCGGCACCATGACCATCACAACGGCCGACGGGAGCGCAGAAAGCACAAGAAGCACGGCCATGGACACGGAGAGGGGGGGCACCATGGAGGGGATCAGGGCCACAGGCATGGGCACGGGCAGGGGAACGCTCATGCCCACATCTGAACCAAAAACGTCCACTGCCCGAACCTCGCCTCGCTGCCCagtctccctcctctacccctctctaccccctctcctgcCCTGTTCCTGACCCCACAACCTGGCTCCTAGAGCCAGCCTGTATCATACTCAACTCTGAGGCCTGACAGCCGACTGCTAGGCATCACTGAGACAATAACAATCTCTTTGTACTCTTCTTTAATTTCACTGCTTTTCTTTtctgcctccctcccccctccctccctctccctcccccctccctccctccccctccctccctctacctcccccctccctccccccctctctccctcccccccccccccccccctccctccctccctccctacttttATCAAGTCAACGAGGACCCAGGATATGGGGCTTTGCTCACCTGTTCAAATCTTAAGAGGTTTCTTTTGTGTCCTTCTATTTTTACATTATCGTGGAGGTTTAGTACAAACTGTAAATAGTGACAACATCAGAAAATCCTGTATCGAACCAGAAGAGTCGGGGAATACATTAACATGCAATCCATGTTTTTCAATTGTTCATTCGAACCTTGTTTTTAACAGATGTCTGACTGTATTTCTTGACTTTGCTGTTTTTGGTTAGCTCTCTGGAAGACCTTTTGCTCAATGACCTACAACAGTTATTCTGAACAGATTTAGCTACGTGCTTTCTTTGACACGGGCAGTTCTACTGGTTTTGATCGACTAGCATTGTATCTCATCATTGTTACGACGGTCACTTTTAACTGGGTATAGAGGAAAACCGAGAAAGCGCAGTTAGCCTCTATCCAAATCGACCTCACGCCACTGAGGTCGATCCAGAAGCTCAAATCTCTCCCCGTAGTGGCAGTCCATGTTTCTTCTAACAATCATCATCCTACTGTTTCCTTTCTAAGTCATTCTGTGTTCCTGCTTCACTACTAGAGGAGATAGCTAGTAAGGAGTCGAGAAACCCAACCCAGAATAGGCCAGATTATGACTAGCCTCTCTAAGTCTGGTTTCCCAGCTAGCTATTAGGCAATGATCCTTCATCAGAATTCTCTCATACCCATCACCACGCTCTCATATTCCGTCTGTGTCCCGGTGTCAATGGTCTGTTCGTCTTCCATTTTGGAGTTCTACTACTCTGGCCTGCTGAGGAGAAATTGTTCTGTCagactgtcagagagagaaaaggagagggggaggaatagagagagaagagcggggaATTCGGACTCTTAATTGCAGTCGCCCCGTTCTCCAGCACATCAAACAGAGAGATGACAGGGCTCTCTCTGCAGCCGGCGGGTACAGAGCTGGGCCCATAATTATCTTTTTAAAGTAGTGCAGATGGGGGCATAATGCCGGGATGAA

Function

GO: NA

KEGG:

id description
K06794 NCAN, CSPG3; neurocan core protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479877 lncRNA downstream 18449 61283563 ~ 61285664 (-) True G423534
TU479850 lncRNA downstream 38065 61265810 ~ 61266048 (-) True G423510
TU479849 lncRNA downstream 38773 61263891 ~ 61265340 (-) True G423509
TU479836 lncRNA downstream 55226 61248568 ~ 61248887 (-) True G423497
TU479834 lncRNA downstream 57322 61246558 ~ 61246791 (-) True G423495
TU480151 lncRNA upstream 17453 61528531 ~ 61528739 (-) True G423794
TU480818 lncRNA upstream 21752 61532830 ~ 61595934 (-) True G424412
TU480882 lncRNA upstream 89676 61600754 ~ 61601112 (-) True G424462
TU480883 lncRNA upstream 90194 61601272 ~ 61601693 (-) True G424463
TU480884 lncRNA upstream 90804 61601882 ~ 61602274 (-) True G424464
trnaa-agc-3 mRNA downstream 37344 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 62107 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA downstream 62107 61139319 ~ 61242006 (-) True LOC110524243
XM_021603713.2 mRNA downstream 87512 61139319 ~ 61216601 (-) False LOC110524243
XM_021603712.2 mRNA downstream 101551 61139319 ~ 61202562 (-) False LOC110524243
XM_021603720.2 mRNA upstream 106909 61617987 ~ 61622355 (-) False LOC110524247
XM_021603723.2 mRNA upstream 149071 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 252040 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 252040 61763118 ~ 61786542 (-) True LOC110524252
XM_021601328.2 mRNA upstream 330483 61841561 ~ 61842727 (-) True tssk6
TU479791 other downstream 232970 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1203057 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2165856 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2267814 59026103 ~ 59036299 (-) True G420982
TU476443 other downstream 2889970 58413128 ~ 58414143 (-) True G420421
TU480894 other upstream 105792 61616870 ~ 61617244 (-) True G424474
TU480919 other upstream 138889 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 147955 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 377120 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 377120 61888198 ~ 61913769 (-) True G424649

Expression Profile