RNA id: XM_021603720.2


Basic Information

Item Value
RNA id XM_021603720.2
length 1674
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110524247
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61617987 ~ 61622355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAATAACACGCACATTCTTTCAATCCCAGGTTTCTTACTTTTTCCTATTCACAATTGTTTCAACTCTTTACAGATACAGTATATGGCAGATTGAAGAGGTTGCGAAAGATAACGCGTGTACGAGGATAAAGGAGATTCCGACCGGGATAACTTTTTCCAAAGATAGGGGCGCCCATGTCAGTCTGTGATTTATAGCCCAAATATGAGGTACATTTATAGCCAGCGGTCTTTGATGGTCCTGTCTTCATTAGGGATCCTATCTGGGATTATGTCTCTGCTATCGGTCATTTTGATTTTCCAGATACAATCACAACAGATTGCTGTGAAGGAATCACCCCCCAACATCTCCATCGTGCCAACTAATGTTTGGGCAGTGCTTATGCCTGTGTCTATagtgctctctgctctctccctcacgctcAATTTGAGCTCTGTCATGGTCTGCCTTCTGCACAGCTACTTTACAACCGAGATATGCAGAGGAGAAGATACAGAAAGAGCAGACTGGTTCCTATTCCATAGCCAAACTGTCCGACATGTGGCCATTGGATTATTTTGCCTTGGGGTTTCAGTATATTTAGCAGCTATGTCCATCTACATGCTGCTGGTGTTTGAGGTAGAGACCGGCATAGCCAGCGCATGCGTACTGGCCTCAGGAATCCTGATTCTGCTGGTGATCGTGATTCACTCACTGGTCAAAGCCGCCCGCACCGCCCAACACTACCATGGTGGGGAGCACACTGACACTGTGTACCAGAACCAGCATGGAGAGTGCACCCCTGCCGTCCACCACGGCGAGCTCCAAGACAGGGACAAACCCAGGAGGCATCGCAACAACTCCCATCTCCACCGGCAGTTGTCCTACCCTCCCTGTACTGACCAAAAGCAGCATCACCAGCATCACTCCCCATCCCACGGCCCACAGAGTCACGGCAGTGACAAGGAGGGCTACAGTAGTGGTGGCAGTGGGGGTGGCTCGAGAATGCACAGGACCCTGTCGACAGAGTCAGGGCCGCTGCAGTCTCCGTCTAAGCCATGGAATGGCATTAACAATGAGATGAGAAGCGTGCTGGCCCGCAAGTCAGGGGCCTCCAGTAAAGACTCTACTCTAGTGTAAGATGCACTGCACAAGTCATCGCAGTTAGCACAAGACTAGTTCATTCCGCCCATACGATCTACCGTTCTGAAGAATATGGATAGAAAATagctgaagctatataaaagctcTGAGCTATCCCACATTTCAATACAGTGGCATTGTCATTTTAATACACCTATCTTAACATCCCTATTGACTTTTTACACACTAACCATGTTTGATTCCATCACTTTTAAGCCCTCTGTAGAATGTTTACTTACTGGTATTCCACTGGAAAATGTTAGTGACTAACTAGCTACAGCTAATGCTTTTGTTGCGACGTGATTATAAGATTTAAAGATTTGCTAATAAATGCTTCCATTTTCAAGTGTTTGGTAAAGACCAAGAACGATCCATGAAATATATTGCCAAAACTGTGTATTACACAATGTATAGAGAAATTCTGTAGTTTCTAGTCTGCATACTgtaaacaaaacatttttaatAACTGTGAATAAACTCATTTTGTAAAACAATTTCAAACCATGAGTATGTTGTTACAAAACACCCTGTCCTAAAAGATCAAGTGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480891 lncRNA downstream 6417 61611298 ~ 61611570 (-) True G424471
TU480887 lncRNA downstream 10524 61603707 ~ 61607463 (-) True G424467
TU480884 lncRNA downstream 15713 61601882 ~ 61602274 (-) True G424464
TU480883 lncRNA downstream 16294 61601272 ~ 61601693 (-) True G424463
TU480882 lncRNA downstream 16875 61600754 ~ 61601112 (-) True G424462
TU480903 lncRNA upstream 5921 61628276 ~ 61628498 (-) True G424483
TU480907 lncRNA upstream 14758 61637113 ~ 61637366 (-) True G424487
TU480917 lncRNA upstream 27093 61649448 ~ 61649651 (-) True G424497
TU480921 lncRNA upstream 29667 61652022 ~ 61652284 (-) True G424500
TU480922 lncRNA upstream 30577 61652932 ~ 61656404 (-) False G424501
XM_036978016.1 mRNA downstream 106909 61304113 ~ 61511078 (-) True LOC110522983
trnaa-agc-3 mRNA downstream 351218 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 375981 61139319 ~ 61242006 (-) False LOC110524243
XM_021603711.2 mRNA downstream 375981 61139319 ~ 61242006 (-) True LOC110524243
XM_021603713.2 mRNA downstream 401386 61139319 ~ 61216601 (-) False LOC110524243
XM_021603723.2 mRNA upstream 37794 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 140763 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 140763 61763118 ~ 61786542 (-) True LOC110524252
XM_021601328.2 mRNA upstream 219206 61841561 ~ 61842727 (-) True tssk6
XM_021603741.2 mRNA upstream 411734 62034089 ~ 62037994 (-) False si:ch211-212d10.2
TU480894 other downstream 743 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 546844 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1516931 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2479730 59132870 ~ 59138257 (-) True lsg1
TU477090 other downstream 2581688 59026103 ~ 59036299 (-) True G420982
TU480919 other upstream 27612 61649967 ~ 61651775 (-) True G424499
TU480929 other upstream 36678 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 265843 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 265843 61888198 ~ 61913769 (-) True G424649
TU481131 other upstream 376171 61998526 ~ 62001309 (-) True G424678

Expression Profile