RNA id: TU423448


Basic Information

Item Value
RNA id TU423448
length 4266
lncRNA type antisense_over
GC content 0.42
exon number 4
gene id G372507
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16609896 ~ 16662496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCAGATGTTTCCTGGTCTGTCCTTATCTTATCCACtgatgatatactgtatctgtcagcacacacagtcacacaaacaTGCTGATAAGCCTGGCCCTAGGTTGCAGCCAATTGTGCTTATTCTGCTCCCAATAGGAgtcaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagctggaAGGAACAAGATATaatagacatacagagagacacagctgGCATTGACAGGAGTTCTCTTTATTGGTAACATATTGATAACACCTCAACACTGTTACACAACACAAGGAATGCTCACTGGAAGAACAGAATTCATCGTCATATTGGATTCATGTTTACAAAGTCATCTTGTGAAAGTGCGGGAATAtcccaatggatttctagtccatcgccttagccactcggccacgacaactagTGTGTGTGAAAGTGAAAGTGGATGATATGATGGCAAGCCCTGGTTGACTCTCAGAGGAGAGTTAAAATGAAGGTTAGGACTAACAGCAACCAGAGTGTGCTAAGATGAACACAAACACAGTCTTAATTTCACCAATGGCCGTGTGAGGTAATGCCACCTCTCTGAGTGACCTCATTCTGATGTTGTTTGCTGGCCTGATTAGCACTGATCCTGTTACTGAGACTACACAGGGGGAGGACTGCCAGGAATACATGCAGTGCATGACCCTGTGTGTGACTGAGGCCTGAAAAATATCATCTTTAGTTGAAACAAAGCGACAccctgcctctgttccttcttccTTTGTTTTAGTAAAATACTGagggatgaacctggagaaatgtaaccactctcaaactcACAGACAGAGACCTGGATGTAAGGACTGATCATCCACGatttcaaaattatagtttcaaccatgttttgaggctttaCATTGTTTGTTTACATTGATTATAAACAtgggagtaaaacaagcttatatgttgggttctgatggggcacgacagttgaactaagctcatgaggcatttataagttatattcttcaacaatCAATGGGTTTACATCATTTACGAGTCAAAAAATGGCTGTAACAATTAAGGACTCTagttttaaagtgtgtgtgtgccagggcaAGTCTTAGGGACAAGCTCTAATTTTCAACCCAACATTGTAGATGGAAGGTGCTCAGCTCTAATTTTCAACCCAACATTGTAGATGGAAGGTGCTCAGCTCTAATTTTCAACCCAACATTGTAGATGGAAGGTGCTCAGCCCTAATTTTCAACCCAACATTGTAGATGTAAGGTGCTCAGCCCTAATTTTCAACCCAACATTGTAGATGTAAGGTGCTCAGCCCTAATTATCAACCCAACATTGTAGATGGAAGTTGCTCAGCCCTAATTTTCAACCCAACATTGTAGATGGAAGGTGCTCAGCCCTAATTTTCAACCCAACATTGTAGATGGAAGGTGCTCAGCCCTAATTTTCAACCCAACATGGAAGGTGCTGTGCTTCAGTGTATGGTGACTCCCCCTAGagttcaagatatgtaacttttaaATGACACAAATCATCCCCATGcgtttggtctgatgaaaaatGCATCATACGGTGATggtttctgtattttgaaagttacatatcttgaaaacgtcattgctgacaagcaaaacttTTTGGGACTaagtcaacaatggactaatgaaagtTTTTGTGTGGAATTGTCTTTTAAGTGCACTGAGAGACAGCAAGGCAAgtcaacagagagggagggagggacacataATACTGGTACACACCCTGTGGACCAGTGACCTCATTTATCAAATGCTCTTAGttatcatataacattattatagAACATTTCTGTGATCATACAATTGTACAATCATTTCTTACAATATGATGAAATTCTCTTTATATAATGTATACACTTATAAATAAAGTATggtcacaaaaaaatataaatatatataattcacAAAACTTCATGCAAAATCTATGTAAATTGCATATTTTTATCACATTGTTGATGTGGATTCTGTCATACGCGATTCACgatcagatgtttacatacaaacattttataaatgaggcccctggatATATATAGGTACTATATCTGTTTACAATGAAATCCCATCAATAACCATATGAAACACTTTTAGTGACCTGCCCACTCTGCCTCAGCAGTAGAGCCTGTTCAAAAGCATGTtttacaatcatcatcatcatcaccgtcatcatcatcatcatcatcatcatcatcatcagtatacACTCTCCAGACAAAAATAATTTTATGCACATTCCAAAGTTAGGAAAAGTTAGTTGGACATAGGAGGTCATAGTTCACCAGCATTCAGTAAAAAATCCAGACAACGAACAATAACACCAATTTTATCGTCATGTTTCCATTTTCATGCAAATAAATGCAGTATAGTCACCACAATGAAACTGTAGTTGTACAATACAGTGTGtaatcatttaaaatgtattgttgTATCATCAGTGACTATATGCAAATGCTCAACACATAGAGAATCAAGTATAAGAACAACAATATACAACGGTCATGCTGTATCGACTTGGCTCATCTTCTCTCCCtgaaggggaagggggaggggtggtggtgcATATAGTTCATCATCAGAGGGTAGGCTGTTTCCATATTTAAAACTGTAGCAAAAACGCACAACTGCACTAATCCTGTTGGTTTATACAATGTGTATTCATTTGATACGCCAGGCAGGAAGCAGCCTTAAGCCTAACTTAAACTTTGCGCAAGTACGCAACTGGGAAAACAGACGTTACTTGCATAGCgaaaataaaacagaaatcaAAATGAATCCCCGCAATTTTGACTCAACGCCATTTTGCTTAGCTAATTGTGTTATTGGGTTGCGTACGGTATGAATTAGACTTTACTGGAGGAGCACAACTCAACTAACACTCACTGGGAAATAACACTGGAGAAGTCATGCTTGTCTTTAACAAGAGGAACAGACTCCTTTAAAGAGAATCAACTGGACCATTAAAGACATTGTACACTTTCATTATAACAACAACAACTTACTtgcatcaataataataataacaacaacaacaatagtagtagtaatagtaataatacaaACAATAACAGAGTAATAAACTTGATTTAAACTGTAGATCCTATATGTATCTGCGCCATGGGGTGGGTCTACAGCAGAGGGAGAGCACTGGACTGAAGGTTTGAGTGTGTTGCCATTTGTATTGGATGATATGGTTGCAGTGATAGTCGTTGctgcagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccaggaggAGTTGAGGCTGTGTGTTGTTAAGTTGCAGTAGTGTGCACTGGTCAGTAAGGAGAGCTGTAGCAATAGAGGGAGGGGGGACAggctctccatcctccctcacctctctctttctctctcgcactctctatcctccctcacctctctctctctccatctctctccatcctccctcacctctctctctccatctctttctatccccagtcacctctctctttctctctcgccctctctatcctccctcacctctctcactctccatctctctccatccatctctttctatccccagtcacctctctctctcgcactctctatcctccctcacctctctctctccatctctcctccctcacctctctctctctctctctctctctctctctctttcctcctggaagacaaaaaaaacattctAGGTTTAACAGCAACTCTGGAAACAATAACTGTCAAgctctgaagtgtgtgtgtgtgtgtgtgtagctgtgtgtgtagctgtgggtgtgtgtgtgtgtgtgtagctgtgtgtgtagctgtgggtgtgtgtgtgtgtgtgtgtagctgtgggagtgtgtgtgtgtgtagctgtgggTGTGCATGTgaatgaatgagtgtgtgtgtgttagtaacaTTGAGTGTGTGTACCAGTTCACTGCTGCAGTGGTGCGGCCGGTGCTCCAGAGCAGTGGAAGTGAACATTCTGCCACTTGCTCTCTCGGCGATGCCACACCCTCGTCTCCTCTGATTGGCTGGAGCATGGGCGGCCAGTGCCGTCGACGAATTGCGTGAGGCGTATGTAGGCGATGCAGGCGGCGTCTTCACCAATCAGGTGGACGTGAGGGTTGAGGATTGTGGTATGGATGGGCTTACTGTTCTTAGACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423387 lncRNA upstream 119 16609502 ~ 16609777 (+) True G372506
TU423386 lncRNA upstream 2159 16607332 ~ 16607737 (+) True G372505
TU423361 lncRNA upstream 36431 16572844 ~ 16573465 (+) True G372480
TU423254 lncRNA upstream 50839 16558656 ~ 16559057 (+) True G372381
TU423246 lncRNA upstream 130494 16476526 ~ 16479402 (+) True G372374
TU423481 lncRNA downstream 9092 16624136 ~ 16688985 (+) True G372513
TU423488 lncRNA downstream 22259 16637303 ~ 16639895 (+) True G372518
TU423248 lncRNA downstream 75914 16690958 ~ 16694551 (+) True LOC110523336
TU423244 lncRNA downstream 120598 16735642 ~ 16738220 (+) False G372373
TU423530 lncRNA downstream 136200 16751244 ~ 16752267 (+) True G372560
XM_021601940.2 mRNA upstream 52191 16516800 ~ 16557705 (+) False pargl
XM_021601938.2 mRNA upstream 52191 16516813 ~ 16557705 (+) False pargl
XM_021601937.2 mRNA upstream 52191 16524237 ~ 16557705 (+) True pargl
XM_021601925.2 mRNA upstream 139554 16454799 ~ 16470342 (+) False LOC110523327
XR_005051667.1 mRNA downstream 75861 16690905 ~ 16693430 (+) False LOC110523336
XM_036976935.1 mRNA downstream 97138 16712182 ~ 16726009 (+) False polm
XM_036976936.1 mRNA downstream 97140 16712184 ~ 16726009 (+) True polm
XM_036976947.1 mRNA downstream 117592 16732636 ~ 16735129 (+) True ved
XM_021601952.2 mRNA downstream 126309 16741353 ~ 16744067 (+) True purbb
TU423147 other upstream 388963 16219606 ~ 16220933 (+) True G372281
TU422347 other upstream 814774 15791559 ~ 15795122 (+) False G371615
TU421847 other upstream 1481079 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 1556340 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 1804425 14804661 ~ 14805471 (+) True LOC118964542
TU423245 other downstream 120598 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 255390 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 255390 16870434 ~ 16882185 (+) True G372618
TU424889 other downstream 1089069 17704113 ~ 17707757 (+) True G373726
TU425343 other downstream 1452399 18067443 ~ 18083365 (+) True arhgef28a

Expression Profile