RNA id: TU427171


Basic Information

Item Value
RNA id TU427171
length 221
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G375730
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 19497070 ~ 19497290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgtatgctgatgacttaacactatacacgtcagctattACAGCGAGTGAAATAAATGCAACACTGGGCCTCCCAGGTTCtaacccaggctgtgtcacaaccggtcGTGACCTGGAGACCCATAGGGTGGAGCACAATTCGggtagcgttgtccgggttaggggaggatttggccaggggactttacttggctcatcgcgctctagcaattccttgtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU427164 lncRNA upstream 5582 19491282 ~ 19491488 (+) True G375723
TU427149 lncRNA upstream 13553 19483237 ~ 19483517 (+) True G375708
TU427137 lncRNA upstream 20664 19476021 ~ 19476406 (+) True G375696
TU427069 lncRNA upstream 74302 19422128 ~ 19422768 (+) True G375629
TU427049 lncRNA upstream 102534 19394202 ~ 19394536 (+) True G375610
TU427179 lncRNA downstream 9327 19506617 ~ 19508974 (+) False LOC110523383
TU427191 lncRNA downstream 9327 19506617 ~ 19512291 (+) False LOC110523383
TU427176 lncRNA downstream 9574 19506864 ~ 19510735 (+) False LOC110523383
TU427190 lncRNA downstream 9574 19506864 ~ 19512291 (+) False LOC110523383
TU427186 lncRNA downstream 11331 19508621 ~ 19512291 (+) True LOC110523383
XM_021602038.2 mRNA upstream 132981 19358271 ~ 19364089 (+) True LOC110523377
XM_036976994.1 mRNA upstream 918842 18558152 ~ 18578228 (+) False LOC110523370
XM_036976993.1 mRNA upstream 918842 18558181 ~ 18578228 (+) False LOC110523370
XM_021602005.2 mRNA upstream 918842 18558182 ~ 18578228 (+) False LOC110523370
XM_021602000.2 mRNA upstream 990928 18488867 ~ 18506142 (+) True egfl7
XM_021602045.2 mRNA downstream 2314 19499604 ~ 19509065 (+) False LOC110523383
XM_036977015.1 mRNA downstream 554103 20051393 ~ 20381619 (+) False LOC110523391
XM_036977012.1 mRNA downstream 554108 20051398 ~ 20264903 (+) False LOC110523391
XM_036977013.1 mRNA downstream 554108 20051398 ~ 20264903 (+) False LOC110523391
XM_036977014.1 mRNA downstream 554109 20051399 ~ 20264903 (+) True LOC110523391
TU425343 other upstream 1413705 18067443 ~ 18083365 (+) True arhgef28a
TU424889 other upstream 1789313 17704113 ~ 17707757 (+) True G373726
TU423600 other upstream 2614885 16870434 ~ 16882185 (+) False G372618
TU423601 other upstream 2614885 16870434 ~ 16882185 (+) True G372618
TU423245 other upstream 2758570 16735642 ~ 16738500 (+) True G372373
TU427802 other downstream 485971 19983261 ~ 19983848 (+) True G376320
TU428545 other downstream 1094190 20591480 ~ 20596863 (+) True G377022
TU428462 other downstream 1246294 20743584 ~ 20758501 (+) True LOC110522816
TU428679 other downstream 1333968 20831258 ~ 20836559 (+) True LOC110522817
TU428818 other downstream 1610879 21108169 ~ 21158919 (+) False LOC110523400

Expression Profile