RNA id: TU440681


Basic Information

Item Value
RNA id TU440681
length 571
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G388020
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30286770 ~ 30287340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccacccctggttgcgcaatcgatatgctgataaaatttagggagtcttgttttcagattagccttgttaaaatccccagctacaatgaatgcagcctccggataaatcgtttccagtttgcagagagttaaataaagttcgttcagagccatcgatgtgtctgcttggggggggatatatacggctgtgattataatcgaagagaattcccttggtagataatgcggtctacatttgattgtgaggaattctaaatcaggtgaacagaaggatttgagttcctgtatgtttctttcatcacaccatgtcacgttggccatgaggcatacgcccccgcccctcttcttaccagaaagatgtttgtttctgtcagcgcgatgcgtggagaaacccgttggctgcaccgcttcggatagagtctctccagtgagccatgtttcagtgaagcaaaggacgttacagtctctgatgtccctctggaatgctacccttgctcggatttcatcaaccttgttgtcaagagactggacattggcaagaagaatgctagggagtggtgcacggtgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440675 lncRNA downstream 3185 30283329 ~ 30283585 (-) True G388014
TU440667 lncRNA downstream 6656 30279805 ~ 30280114 (-) True G388006
TU440664 lncRNA downstream 9454 30277092 ~ 30277316 (-) True G388003
TU440594 lncRNA downstream 68804 30212692 ~ 30217966 (-) True G387938
TU440597 lncRNA downstream 74884 30168119 ~ 30211886 (-) False G387939
TU440704 lncRNA upstream 12897 30300237 ~ 30300535 (-) True G388043
TU441190 lncRNA upstream 350589 30637929 ~ 30638138 (-) True G388485
TU441209 lncRNA upstream 362343 30649683 ~ 30649890 (-) True G388504
TU441211 lncRNA upstream 362960 30650300 ~ 30650520 (-) True G388506
TU441695 lncRNA upstream 419485 30706825 ~ 30711652 (-) True G388971
XM_036977264.1 mRNA downstream 29661 30244530 ~ 30257109 (-) True haus4
XM_021602459.2 mRNA downstream 31373 30244530 ~ 30255397 (-) False haus4
XM_021602432.2 mRNA downstream 43398 30218103 ~ 30243372 (-) False LOC110523594
XM_036977273.1 mRNA upstream 568202 30855542 ~ 31286199 (-) False LOC110523598
LOC110522855 mRNA upstream 1309718 31597058 ~ 31597647 (-) True LOC110522855
XM_021602462.2 mRNA upstream 1491925 31779265 ~ 31942907 (-) True LOC110523605
XM_036977276.1 mRNA upstream 1798897 32086237 ~ 32150962 (-) False LOC110523606
XM_036977275.1 mRNA upstream 1798897 32086237 ~ 32151009 (-) False LOC110523606
TU440596 other downstream 74884 30210763 ~ 30211886 (-) True G387939
TU440406 other downstream 458462 29822744 ~ 29828308 (-) True LOC110523591
TU440412 other downstream 462200 29821467 ~ 29824570 (-) False LOC110523591
TU445209 other upstream 3064077 33351417 ~ 33352338 (-) True G392227
TU445234 other upstream 3093452 33380792 ~ 33381565 (-) True G392245
TU445496 other upstream 3446822 33734162 ~ 33762381 (-) True G392503
TU445896 other upstream 3860123 34147463 ~ 34148628 (-) True G392858
TU448525 other upstream 5565450 35852790 ~ 35853357 (-) True G395297

Expression Profile