RNA id: TCONS_00033333


Basic Information

Item Value
RNA id TCONS_00033333
length 1531
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_016001
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57226376 ~ 57228293 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGTTATGTTTGATTGCCAGCtgaattttttttagcaaaagaaGTTGTCAATCTTAATCCTTTGGTCAAAAAAAGCCATAAAATGACTTAGTAAAATATTGTAGGAGACAGTGTTATGATAGATAATGCCGTTTATAAAACTCGACAGCAACAGTCCCATCCAAATTTGTTATTATGCTGGAAAGTGCGCATGAACATCCCGCGAAACATTTCCTTTTGTGTTTCACGGATAAACAGCCAGTATGCAGTTCGGGAGGATACGAAGGTATCCGCTGGACTCCCATTCCTTTACCCACTAGAAAGTGAACGTCACTCAGTACTTCATTATTGAACAGAAACGCAAATCTCTCTTTCACGGTGCTTTTCGTCGCCTGCCAGTTATAAACAGGCTCCCGGTACACAAGCACGGCGGCAGCGGCTGGTGGAGCGGACAGGGCTGAGTGTGTGGCGGCCGCCGGTGTCATCGCTGCGTTAGACGGGCTCCCTGTCATGTTCGAGGCGGCCGGAGCCAGCGGGCCCACCACCGCCGCGGCAGCCGGGACAGCGTTCATCAAGTTCGGCGGAAGTCCCGACGCGACACCGGGGCTTTCAAGGGCCTGAGGCCCCGGTTGAGGATTTGAGCGTCTCGTTACCCCCTGAGAGCCTCCACCGCCCCCGACCGATCCTCCGTGACTCGCCGCCAATGCGAAAGGGCTGTTGCTCGGTTGACTGTTACCCAAAGGTCCGGGCACCGAGAAATTTAAACACGGAACCCGACCGCTATTGTCTCCTGTAGCCATCTTGGACCGAGGCGCGCACCCGCTGAATGAGTAAACAAATCGCGCGCACTGTCAACATCCGGTCCGAAGGGCACATGTGTGGAgttttatgtcagatttattattaataaaatagtaataactaattgaattttgtatttatattatatatatatattgtttagtttttatttataatttaaataagtttttttacaTCTAAACACAACAGAGGTATAATgtaatgttaatgaaattatctATAAATTAAGGAAAACATGCACATATGCGCTACATTAGTTATATTCAGAATAGCacacactgttattattatttcagcagTACATTTTATCTGATGGTTTTGTACATAAACGCCTGTGGTGTTAAAACACCACAAACTGTctcattatgaaaaataaaactgataaacAATTTCCATAACTCGGCGAGGTTTGTAATTGTCCTGCAGAGTGTTCAGAGCACAGTCATTATAATGTAGGAGATGGAGTAATCCAGAAATCCTTTGTGTCTCCCTCATAAAAGCACATCTTCGTTGTACCACGAAACAACTGAAGGCTATGCTAAAGGATGATGGATAACATGAATAAATGGTCTGTTGTCTTATATCCACTGTTTACCTTGCTCACTGTCCGTATTGTGTGTCCGTGTATTCATGAAAGTGACAGAATAAAAAGATATACAGATGATGAATGCTCGTGAACGCGACGACGCCCCCGAGCGGACGTCAGGAGGAGCGCGCCAATGACGTCAC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0035282 segmentation biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0010159 specification of animal organ position biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033732 lncRNA upstream 13889 57204631 ~ 57212487 (+) True XLOC_016000
TCONS_00033730 lncRNA upstream 104563 57117646 ~ 57121813 (+) False XLOC_015998
TCONS_00033731 lncRNA upstream 106025 57117651 ~ 57120351 (+) True XLOC_015998
TCONS_00033727 lncRNA upstream 167738 57027888 ~ 57058638 (+) False XLOC_015996
TCONS_00033728 lncRNA upstream 167738 57036227 ~ 57058638 (+) True XLOC_015996
TCONS_00033733 lncRNA downstream 390938 57619231 ~ 57620435 (+) True XLOC_016003
TCONS_00031680 lncRNA downstream 620566 57848859 ~ 57853882 (+) False XLOC_016005
TCONS_00033734 lncRNA downstream 664486 57892779 ~ 57909018 (+) False XLOC_016005
TCONS_00033334 lncRNA downstream 677256 57905549 ~ 57906787 (+) True XLOC_016005
TCONS_00033735 lncRNA downstream 691158 57919451 ~ 57922716 (+) True XLOC_016006
TCONS_00031676 mRNA upstream 51422 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031675 mRNA upstream 250089 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031674 mRNA upstream 315371 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031671 mRNA upstream 555050 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031667 mRNA upstream 749386 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031677 mRNA downstream 275780 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031678 mRNA downstream 573667 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031679 mRNA downstream 620551 57848844 ~ 57871253 (+) False XLOC_016005
TCONS_00031681 mRNA downstream 636014 57864307 ~ 57901998 (+) False XLOC_016005
TCONS_00031682 mRNA downstream 780687 58008980 ~ 58014652 (+) True XLOC_016008
TCONS_00031673 other upstream 378517 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031672 other upstream 387577 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031670 other upstream 718987 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 732715 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 749492 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031695 other downstream 1942975 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 2093837 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 2093941 59322234 ~ 59324688 (+) False XLOC_016028
TCONS_00031698 other downstream 2093948 59322241 ~ 59324584 (+) False XLOC_016028
TCONS_00031699 other downstream 2093965 59322258 ~ 59324621 (+) False XLOC_016028

Expression Profile

//