RNA id: TCONS_00033733


Basic Information

Item Value
RNA id TCONS_00033733
length 473
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id XLOC_016003
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57619231 ~ 57620435 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTACTTCAGCCTGATGAGGTCTCTGAAGGCCCAGGACTCCAGCGTGCTGATGGGGTTGTAGGACAGGTTAAGAGCCGTCAGGTAAGCCAGATTTCGGAAAGAAGCAGATGGCACGGATGTGATGTTGGTGTTGGTGATGAAAAGCCAGGACAGATTGAGTCCCTGGAAGCTGAGCGGGGAGATGAACTCCAGAAAGGGCCAGTCGTGGATCTCCAGGCCCCGCAGCGCCGTCAGCTTCCGGAAGTTCTGCTCCTCCAGGGTGGAGATGCTGAGGTGGCGCAGGCGGAGGGTCACCAGCCCACGCAGGTACGACAGAGTCTGGCCCGAGATGGAGGTCAGGTTACACCGCGCCATGGTCAGATCCTCAAGAGACAGCAGACCTGAGAACGCCTTGTGGGAGATGTAGACCAGATCATTGTCTCCAACCTGCAGACACAAATATTGAGCACACACAGAATCATTATGGACCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033333 lncRNA upstream 390938 57226376 ~ 57228293 (+) True XLOC_016001
TCONS_00033732 lncRNA upstream 406744 57204631 ~ 57212487 (+) True XLOC_016000
TCONS_00033730 lncRNA upstream 497418 57117646 ~ 57121813 (+) False XLOC_015998
TCONS_00033731 lncRNA upstream 498880 57117651 ~ 57120351 (+) True XLOC_015998
TCONS_00033728 lncRNA upstream 560593 57036227 ~ 57058638 (+) True XLOC_015996
TCONS_00031680 lncRNA downstream 228424 57848859 ~ 57853882 (+) False XLOC_016005
TCONS_00033734 lncRNA downstream 272344 57892779 ~ 57909018 (+) False XLOC_016005
TCONS_00033334 lncRNA downstream 285114 57905549 ~ 57906787 (+) True XLOC_016005
TCONS_00033735 lncRNA downstream 299016 57919451 ~ 57922716 (+) True XLOC_016006
TCONS_00033335 lncRNA downstream 377861 57998296 ~ 57998583 (+) True XLOC_016007
TCONS_00031677 mRNA upstream 55343 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031676 mRNA upstream 444277 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031675 mRNA upstream 642944 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031674 mRNA upstream 708226 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031671 mRNA upstream 947905 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031678 mRNA downstream 181525 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031679 mRNA downstream 228409 57848844 ~ 57871253 (+) False XLOC_016005
TCONS_00031681 mRNA downstream 243872 57864307 ~ 57901998 (+) False XLOC_016005
TCONS_00031682 mRNA downstream 388545 58008980 ~ 58014652 (+) True XLOC_016008
TCONS_00031683 mRNA downstream 600728 58221163 ~ 58242865 (+) True XLOC_016012
TCONS_00031673 other upstream 771372 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031672 other upstream 780432 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031670 other upstream 1111842 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 1125570 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 1142347 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031695 other downstream 1550833 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 1701695 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 1701799 59322234 ~ 59324688 (+) False XLOC_016028
TCONS_00031698 other downstream 1701806 59322241 ~ 59324584 (+) False XLOC_016028
TCONS_00031699 other downstream 1701823 59322258 ~ 59324621 (+) False XLOC_016028