RNA id: TCONS_00033335


Basic Information

Item Value
RNA id TCONS_00033335
length 288
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id XLOC_016007
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57998296 ~ 57998583 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCACatttgacgtctatttgacatccacacattgatgccttTTTGGCCATCAAAAGACACAAAATTTGTTATAAAATACGAAATGTTTAATTATATGAAAGCTTCGATTCAAAATCCTAATTTACGCAGATTTTTGTACTAATTAAAGCATAAAAAAGCATCAGAAATTCTAAACGATTAGATGTCtaaaccttgacgtctatttgacatccaatGATTGATGCAtttttaccatcaaaataaagacacaaaaagtCTAATAAGTTTTACTTGACTGAAAGCTTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033735 lncRNA upstream 75580 57919451 ~ 57922716 (+) True XLOC_016006
TCONS_00033734 lncRNA upstream 89278 57892779 ~ 57909018 (+) False XLOC_016005
TCONS_00033334 lncRNA upstream 91509 57905549 ~ 57906787 (+) True XLOC_016005
TCONS_00031680 lncRNA upstream 144414 57848859 ~ 57853882 (+) False XLOC_016005
TCONS_00033733 lncRNA upstream 377861 57619231 ~ 57620435 (+) True XLOC_016003
TCONS_00033736 lncRNA downstream 25091 58023674 ~ 58024300 (+) True XLOC_016009
TCONS_00033737 lncRNA downstream 89187 58087770 ~ 58088301 (+) True XLOC_016010
TCONS_00033738 lncRNA downstream 144786 58143369 ~ 58174563 (+) False XLOC_016011
TCONS_00033739 lncRNA downstream 160363 58158946 ~ 58174563 (+) True XLOC_016011
TCONS_00033336 lncRNA downstream 415672 58414255 ~ 58425618 (+) True XLOC_016013
TCONS_00031681 mRNA upstream 96298 57864307 ~ 57901998 (+) False XLOC_016005
TCONS_00031679 mRNA upstream 127043 57848844 ~ 57871253 (+) False XLOC_016005
TCONS_00031678 mRNA upstream 179157 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031677 mRNA upstream 434408 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031676 mRNA upstream 823342 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031682 mRNA downstream 10397 58008980 ~ 58014652 (+) True XLOC_016008
TCONS_00031683 mRNA downstream 222580 58221163 ~ 58242865 (+) True XLOC_016012
TCONS_00031684 mRNA downstream 378812 58377395 ~ 58431350 (+) False XLOC_016013
TCONS_00031685 mRNA downstream 740528 58739111 ~ 58742863 (+) True XLOC_016014
TCONS_00031686 mRNA downstream 842598 58841181 ~ 58848884 (+) True XLOC_016015
TCONS_00031673 other upstream 1150437 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031672 other upstream 1159497 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031670 other upstream 1490907 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 1504635 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 1521412 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031695 other downstream 1172685 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 1323547 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 1323651 59322234 ~ 59324688 (+) False XLOC_016028
TCONS_00031698 other downstream 1323658 59322241 ~ 59324584 (+) False XLOC_016028
TCONS_00031699 other downstream 1323675 59322258 ~ 59324621 (+) False XLOC_016028