Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000271 |
| length | 772 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_000154 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 12009673 ~ 12044390 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0060291 | long-term synaptic potentiation | biological_process |
| GO:0060292 | long-term synaptic depression | biological_process |
| GO:0006874 | cellular calcium ion homeostasis | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008273 | calcium, potassium | molecular_function |
| GO:0005262 | calcium channel activity | molecular_function |
| id | description |
|---|---|
| ko02000 | Transporters |
| id | description |
|---|---|
| ZDB-GENE-060825-277 | Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport; cellular calcium ion homeostasis; and regulation of synaptic plasticity. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC24A2 (solute carrier family 24 member 2). |
| ensembl_id | ENSDART00000145929 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002814 | lncRNA | upstream | 81440 | 11933317 ~ 11933676 (+) | True | XLOC_000152 |
| TCONS_00002813 | lncRNA | upstream | 1227799 | 10780928 ~ 10787317 (+) | True | XLOC_000143 |
| TCONS_00003036 | lncRNA | upstream | 1334275 | 10645364 ~ 10680841 (+) | True | XLOC_000138 |
| TCONS_00003035 | lncRNA | upstream | 1347088 | 10645264 ~ 10668028 (+) | True | XLOC_000137 |
| TCONS_00000251 | lncRNA | upstream | 1351591 | 10662312 ~ 10663525 (+) | True | XLOC_000139 |
| TCONS_00003037 | lncRNA | downstream | 13214 | 12046492 ~ 12048509 (+) | False | XLOC_000155 |
| TCONS_00000280 | lncRNA | downstream | 139044 | 12172322 ~ 12181039 (+) | False | XLOC_000159 |
| TCONS_00000284 | lncRNA | downstream | 151219 | 12184497 ~ 12187708 (+) | False | XLOC_000159 |
| TCONS_00000285 | lncRNA | downstream | 152872 | 12186150 ~ 12187708 (+) | True | XLOC_000159 |
| TCONS_00000292 | lncRNA | downstream | 296265 | 12329543 ~ 12333372 (+) | True | XLOC_000162 |
| TCONS_00000269 | mRNA | upstream | 20406 | 11977426 ~ 11994710 (+) | True | XLOC_000153 |
| TCONS_00000267 | mRNA | upstream | 114696 | 11881559 ~ 11900420 (+) | False | XLOC_000151 |
| TCONS_00000268 | mRNA | upstream | 123097 | 11882186 ~ 11892019 (+) | True | XLOC_000151 |
| TCONS_00000266 | mRNA | upstream | 277521 | 11736420 ~ 11737595 (+) | True | XLOC_000150 |
| TCONS_00000264 | mRNA | upstream | 281986 | 11711226 ~ 11733130 (+) | False | XLOC_000149 |
| TCONS_00000273 | mRNA | downstream | 13266 | 12046544 ~ 12048509 (+) | False | XLOC_000155 |
| TCONS_00000275 | mRNA | downstream | 15951 | 12049229 ~ 12058439 (+) | False | XLOC_000156 |
| TCONS_00000276 | mRNA | downstream | 15953 | 12049231 ~ 12058134 (+) | True | XLOC_000156 |
| TCONS_00000277 | mRNA | downstream | 35522 | 12068800 ~ 12097818 (+) | False | XLOC_000157 |
| TCONS_00000279 | mRNA | downstream | 101851 | 12135129 ~ 12138612 (+) | True | XLOC_000158 |
| TCONS_00000263 | other | upstream | 319948 | 11691748 ~ 11695168 (+) | True | XLOC_000148 |
| TCONS_00000259 | other | upstream | 545466 | 11469536 ~ 11469650 (+) | True | XLOC_000146 |
| TCONS_00000258 | other | upstream | 634505 | 11380497 ~ 11380611 (+) | True | XLOC_000145 |
| TCONS_00000253 | other | upstream | 1318788 | 10683995 ~ 10696328 (+) | True | XLOC_000140 |
| TCONS_00000247 | other | upstream | 1651265 | 10363720 ~ 10363851 (+) | True | XLOC_000133 |
| TCONS_00000274 | other | downstream | 13313 | 12046591 ~ 12047368 (+) | True | XLOC_000155 |
| TCONS_00000278 | other | downstream | 38643 | 12071921 ~ 12077478 (+) | True | XLOC_000157 |
| TCONS_00000299 | other | downstream | 315080 | 12348358 ~ 12357076 (+) | True | XLOC_000164 |
| TCONS_00000301 | other | downstream | 360931 | 12394209 ~ 12395287 (+) | False | XLOC_000165 |
| TCONS_00000306 | other | downstream | 398050 | 12431328 ~ 12431442 (+) | True | XLOC_000166 |
