RNA id: LOC118965028


Basic Information

Item Value
RNA id LOC118965028
length 944
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC118965028
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45765669 ~ 45774928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTTATTACGATGATGATCTGATGAAGAAGCAGCTGGGAGCGACAGAGAGGCAGATCAGGGGGGAGCTTGAGAAGCTTCACCAGTtcctcagagaggaagaggaggccagACTGACTGcacggagggaggaagagaaggagaagggtaaGATGATCACCAGAGAGAAAGAACATTCAGGACCAGATCACCTCTCTTACAGAAATCATCCCTGCTGTGAAACAGAACCTGCGGAAACAGAATGTGTCATTTCTCAAGAGCTACAAACACACCCAGACAAGCTCCAGAGCCCAGTTCACACTGCCAGATCCACAGCTGGTCTCAGGAGCACTGGTAGATGTGGTAAAACACCTGGGAAATCTGCAGTTCATAGTCTGGAAGAAGATACAAAGGATTGTCAAGTACACTCCTGTGATTCTGGACTCCAATACTGCTGAATGTAGGCTCTCTCCGTCTGATGATCTGACCACTGTGAGACATTTAGAAAAAAGGCAGCAGCTCCCTGACAACCCAGAGAGGAACAAAATTTACGGCAATGTTCTGGGCTCTGAAGGGTTTAGGTCAAGAAAAGACAGCTGGGAGCTGGAGGTAGGGGACCACTCTCACTGGTATATAGGTGTGGCCAAGGAGTCAATCAACAGGAAGAAGGAAATATTTGCAACCACGGTGTATAGATACTAATCCATATATTTGAGGAGAGGTAAATATTGTGCAGGAGATAAGTCTCACACTAAAGAGGAGACTCCAGAGGACCAGTGTGCAGCTGGACTATGACAAGAGGGAGGTGTCTTTCTACGACCTGAAAGACATGACACACATCTACAAATACAAAGACACGTTTACTGAGAGAATGTACCCATACCTCTCTAATGGAAAGCTTGGTGATGCTGACCATCCTGATATACATATCTGCCAATCAGAGGTCTCTCTGACAGTGATGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU582163 lncRNA downstream 12774 45752667 ~ 45752895 (-) True G513123
TU582162 lncRNA downstream 13297 45751909 ~ 45752372 (-) True G513122
TU582154 lncRNA downstream 20265 45745202 ~ 45745404 (-) True G513114
TU582103 lncRNA downstream 93719 45656094 ~ 45671950 (-) True LOC110526035
TU581937 lncRNA downstream 116608 45648684 ~ 45649061 (-) True G512925
TU582200 lncRNA upstream 20874 45795802 ~ 45796144 (-) True G513159
TU582202 lncRNA upstream 22250 45797178 ~ 45797412 (-) True G513161
TU582204 lncRNA upstream 24532 45799460 ~ 45799729 (-) True G513163
TU582210 lncRNA upstream 30806 45805734 ~ 45805966 (-) True G513169
TU582851 lncRNA upstream 173114 45948042 ~ 45979860 (-) True G513773
XM_036980194.1 mRNA downstream 22574 45655985 ~ 45743095 (-) False LOC110526035
XM_036980201.1 mRNA downstream 22574 45655985 ~ 45743095 (-) False LOC110526035
XM_036980203.1 mRNA downstream 22574 45655985 ~ 45743095 (-) False LOC110526035
XM_036980209.1 mRNA downstream 22574 45655985 ~ 45743095 (-) False LOC110526035
XM_036980193.1 mRNA downstream 22575 45655985 ~ 45743094 (-) False LOC110526035
XM_021606628.2 mRNA upstream 76302 45851230 ~ 45863241 (-) True LOC110526037
XM_036979104.1 mRNA upstream 129123 45904051 ~ 45906832 (-) False LOC100136024
NM_001124347.2 mRNA upstream 129138 45904066 ~ 45907159 (-) True LOC100136024
XM_021606629.2 mRNA upstream 140844 45915772 ~ 45954751 (-) True LOC110526038
XR_005052123.1 mRNA upstream 198845 45973773 ~ 45995385 (-) False LOC110526039
TU581656 other downstream 489282 45274638 ~ 45276387 (-) True znrf3
TU580171 other downstream 1553846 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 1555004 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 1555004 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 1817280 43946338 ~ 43948389 (-) True prodhb
TU583050 other upstream 584960 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 595762 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 1135730 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 1241234 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 2199865 47974793 ~ 47976975 (-) True G515094

Expression Profile