RNA id: TU583552


Basic Information

Item Value
RNA id TU583552
length 293
RNA type TUCP
GC content 0.42
exon number 1
gene id G514434
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46910658 ~ 46910950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583548 lncRNA downstream 937 46909376 ~ 46909721 (-) True G514430
TU583542 lncRNA downstream 7075 46901544 ~ 46903583 (-) True G514424
TU583481 lncRNA downstream 108812 46801577 ~ 46801846 (-) True G514363
TU583289 lncRNA downstream 336422 46573241 ~ 46574236 (-) True G514184
TU583235 lncRNA downstream 360867 46487166 ~ 46549791 (-) True G514134
TU583553 lncRNA upstream 186 46911136 ~ 46911475 (-) True G514435
TU583568 lncRNA upstream 5355 46916305 ~ 46916540 (-) True G514445
TU583906 lncRNA upstream 13076 46924026 ~ 46924560 (-) True G514737
TU583913 lncRNA upstream 17049 46927999 ~ 46928331 (-) True G514744
TU583918 lncRNA upstream 18859 46929809 ~ 46930030 (-) True G514747
XM_021606643.2 mRNA downstream 439526 46461363 ~ 46471132 (-) True rnf215
XM_021606642.2 mRNA downstream 439527 46461363 ~ 46471131 (-) False rnf215
XM_021606644.2 mRNA downstream 439527 46461363 ~ 46471131 (-) False rnf215
XM_036980253.1 mRNA downstream 439527 46461363 ~ 46471131 (-) False rnf215
XM_036980251.1 mRNA downstream 480051 46367701 ~ 46430607 (-) False LOC110526044
XR_002473865.2 mRNA upstream 65445 46976395 ~ 46980777 (-) False LOC110526055
XM_021606655.2 mRNA upstream 134543 47045493 ~ 47056805 (-) True utp15
XM_036981752.1 mRNA upstream 435884 47346834 ~ 47349012 (-) True LOC118965029
XM_036981754.1 mRNA upstream 440761 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 596213 47507163 ~ 47511010 (-) True LOC118964878
TU583053 other downstream 480298 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 549772 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1634271 45274638 ~ 45276387 (-) True znrf3
TU580171 other downstream 2698835 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 2699993 44209338 ~ 44210665 (-) False nf2a
TU583955 other upstream 105212 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 1063843 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1353043 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1381896 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 1381896 48292846 ~ 48293454 (-) False LOC110512142

Expression Profile