RNA id: TU583906


Basic Information

Item Value
RNA id TU583906
length 535
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G514737
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46924026 ~ 46924560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacttattttatgtgcaatctgcaaccctgtgtgtttgtgtgtgtgtgtgtgcgtgtgcgtgcccgtgtgtgaattaaagggactgtctagctcagtagtctgcatattagttgcagtagttggcgcacctctcctatctctgattgttctaggggtcttctgccagaggttacctcagcatatgtaggctgacgatctgactgatacatggtgtggactgcatcatgtggtctacttccctgaagggcagtgttctgaccgaccctggagtagtggtcagagctgtgttgtgatgggctgggtctagtagagctgtgttgtgatgggacaggtctagtagagctgtgttgtgatgggccgggtctagtagagctgtgttgtgatgggccgggtctagtagagctgtgttgtgatgggccgggtctagtagagctgtgttgtgatgggccgggtctagtagaggtttgttgtgatgggccaggtctagtagagctgtgttgtgatgggccgggtctagtagagctgtgttggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583568 lncRNA downstream 7486 46916305 ~ 46916540 (-) True G514445
TU583553 lncRNA downstream 12551 46911136 ~ 46911475 (-) True G514435
TU583548 lncRNA downstream 14305 46909376 ~ 46909721 (-) True G514430
TU583542 lncRNA downstream 20443 46901544 ~ 46903583 (-) True G514424
TU583481 lncRNA downstream 122180 46801577 ~ 46801846 (-) True G514363
TU583913 lncRNA upstream 3439 46927999 ~ 46928331 (-) True G514744
TU583918 lncRNA upstream 5249 46929809 ~ 46930030 (-) True G514747
TU583939 lncRNA upstream 32638 46957198 ~ 46993287 (-) True G514766
TU583915 lncRNA upstream 46804 46971364 ~ 46980318 (-) False LOC110526055
TU583914 lncRNA upstream 50556 46975116 ~ 46980318 (-) False LOC110526055
XM_021606643.2 mRNA downstream 452894 46461363 ~ 46471132 (-) True rnf215
XM_021606642.2 mRNA downstream 452895 46461363 ~ 46471131 (-) False rnf215
XM_021606644.2 mRNA downstream 452895 46461363 ~ 46471131 (-) False rnf215
XM_036980253.1 mRNA downstream 452895 46461363 ~ 46471131 (-) False rnf215
XM_036980251.1 mRNA downstream 493419 46367701 ~ 46430607 (-) False LOC110526044
XR_002473865.2 mRNA upstream 51835 46976395 ~ 46980777 (-) False LOC110526055
XM_021606655.2 mRNA upstream 120933 47045493 ~ 47056805 (-) True utp15
XM_036981752.1 mRNA upstream 422274 47346834 ~ 47349012 (-) True LOC118965029
XM_036981754.1 mRNA upstream 427151 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 582603 47507163 ~ 47511010 (-) True LOC118964878
TU583552 other downstream 13076 46910658 ~ 46910950 (-) True G514434
TU583053 other downstream 493666 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 563140 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1647639 45274638 ~ 45276387 (-) True znrf3
TU580172 other downstream 2713361 44209465 ~ 44210665 (-) True nf2a
TU583955 other upstream 91602 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 1050233 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1339433 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1368286 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 1368286 48292846 ~ 48293454 (-) False LOC110512142

Expression Profile