RNA id: XM_021606642.2


Basic Information

Item Value
RNA id XM_021606642.2
length 3690
RNA type mRNA
GC content 0.43
exon number 10
gene id rnf215
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46461363 ~ 46471132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCTTCCTGTTCTACAGGAAGTAGTGTTCTTGCTTACATTTTTGGGGTCCAAGCCAAAAAGTACAGTAACTTAGTTGGTTCTGTAAAATAATGGTTGACAGTTGATaagattatttattttataatatttttAATTTACGCGTTTCTTCGGCCATGTCTGCAAGCTGCTGCTATTTTATCGTGGTGTTTCTAGTCTCGGCTCCTTCGTTCTTGTCGTGTCTGCTAGTTACGGGCGCTCAGGTCGCCTTGGTCGAGGTTCTGCTGAGAGAACGTCCAGATGTCAGCACCGTTCTACAAGGCGAGGTACTCGAAGCGAACTGGGAAAGCAGCAGCGTACCCGAAAAACACAATCAACAACAAGAGCATGATCTCGAAGGGGACCTCATATTAGTGCAGGATGAGGAGCCGCAGGTGAGCCGGGATAAAGGTGGGGGTGTCCAAGCCAAAGACCAGGAGCCCTGGATAGGTGTGGTGCCTGTCAAAGTGGAGGAGAGCAAAGCTTCCACTGCTGGGAACAGCCAGGAATCCTTTGCTGCTGCCGTTGTCAATAAAATGAAACGAGCCTTGGTCCTGGGGGCTTCTGCACTCATCATCCTAGCCCTCAATCAGAACACTATCAGAGAGATGGATCTGTCCCAAGTCCTCTCTAAGCCAGTCATTGTCATCCAGACATCAGAAAATGTTACCAAGCTTATCGGAGCACTCCTCAGGGGCCTTCATGCTACTGTGAAAATCACATACAAGACTATTCTACAGGACAACTTGGGGGCCACCCTGACATTGTGGTCCACGTGCGGTCTCTCCAGAGGCGGTCTGTATGGAGAGTGGCAGGGGGTCATCTGCACCGGAGAGACCAACTCGCAGGTCCAGAAGTACCTGCATCAGCTGTGGAACACGGTCCTACTGGTGGCTCTGATCCTCTGTACAGGGGTCATAGTTCAGGCTCGATGGCAGTACCAGGACAACCAACTCAATGACGACCTGGAGTTACCAAAACAGGACATCCTGAAGAGACTGTCTTCCCTGAAGACCAGGATGTACCGGCAGCCCAAACCGTGGTGTGACCCAGCGCAGCTAGAGACAGACAACTGTGCTGTCTGTCTGGAACAGTTCAACAACAACCAgTGTCTTCGCGTGCTGCCCTGCCTCCATGAGTTCCACAGGGACTGTGTGGATCCGTGGTTGCTCCTGCAGCACACCTGTCCTCTGTGTAAACGCAGCATACTCAGTAACCTCTGTAGAGACAGCTAATGGTAGCCTTGGCCCAACTCCTCACCCCACTGACCAGGGCCCagtttttaaaaacttttaatCCGTATCAGAATTTCAATTCTGTAATCCCCATTTTTGCTATCCAGGTTCAGATCAATCTGGCTGTTTTTGAGCCAGTTTTCAGAAAAAAATCAGGATCATTCTGATCCAGATTCCACAATATCAAGATCACAGAATTAGGATTTTCAGTGTTTTGAACAGGCCTAAATCTTGCCATCTACTGGACAAATTGTGGTACCACTACCACACTGTCATAGGGTAACAGAGATGAGTGAACTACATGAATGGGGGATCAAGATAATCCCAGTTTTTGGCATCAAAACTATCCTAATCAGTATCTTTTAGAGTTTTGGCATGATTCAAAAAAATGACATGATTAAAGGTCAGATTGGATTACCAAATCCTTATCCGGAGGATCATAATCACATTTTTCAGTTACATTTTTGTAATAATTTTGAATCCTGTCCGATTCCGGAATCTGATCAGATAACTTCTGAAAAGCTGGGCCCAGAACATTGGGATCAAGTTGTCTTGTAGTCTGTCGTGACTAGTTTTCAGTAGCAGTTCCAGACCTCACCTCTTCCTCCTGCACTGGATTGTGGTCAGGGGAGCTTCTCCCAGCAGCTGGCCTTCTTATTGGACAatgttgacctctgaccttttgTGGACAGCCAATCCTGAAGCAGCTTCACTTATGTGGTACTGTAAAACAAATGTTACCGTACCGGTGTTGAAACAAACAGTACTTTCTTCCTGGGATAACATACTGTACAATGACTTTACTCTATTCTctcccacccacctctctctcgctgtatgtGTGATAGAGTACTGGTGCCTCATGGTGAAAGTGTCTATACATGTGGAGAATTATAGAAGGGCATTCTAATGTTCTGTGAATCTGGTGGAATTCCATGTATGTTCTTTACAGGGAAATGAATTAAGTCCAAGGCATTTTAATGTGAAAAAATAAGATATAGCTAGGTATATTTGCATGGATGTTAAATGCAATATGGTACAAAGCATGGATAACAGTGTGTTGCTAACTGGCATCAAAACGCATCTGGTCATGTGGGGCCCATATTCCACCATATCACAGGATCAGTATAATCTCAAAAGTTAATTTAAATTTGTGTAGATGGACTAATTTCATCCAGACTATTATTGTGTACTCTGAGTCCAATTTCAAAGTTTGTGTTAATTCTGAATTAATATGAATAAGGGCAGGGATTAATTATGTAAGGGTAACAATTAAATTGTTACCCCTACATTTGTTAAACTCTGTAGAGAGACTGCTCTGTGAGGTAAATACCAGATAACCAGAGTAGctgtacagagacagacacagcatGTTACAAACACAGCCGCACTTAGTGTACTACTTGACAATACTTATGTTATATTAATCCTTTGTAGTCCTTAAATTATTTTATTATAAACCAGTGACCTTGTAGAACTGAAACAGACTTGACCTTGGCTAACCAATGAGTATAGTATGGAAAGGTCAAATGGAGTCACTTGTATCACACTTCAACCACTTTCACTCAACCACATCCCacaggcagtcattgtaaataataatttttcttaaccgacttgcctaattaaataaaaggttaaataaattaaatgttAAAAAATCTAGCAACACCTTATAGGGAAATGTGAATACTCTAAATGCTTCCTACCATCAGCTAATCACTAGAGAAATATAGCTGCAGTTTCCATCTTTCACCATCCTATGGTATTATGTTGCCACTAGAACACTTTAAAGTCAACGCTCAGTTCCCACAGAAATACTCCATTGGAAAAGCTCTAACCACagtattaaatgtatttattattttgtttgtttttaaagaGAACTTCAAAAagcaaattgtatttttttttttgtacaaaaATGCTCTTATAGATCTTTCTATAGGATTCTCTTGTTATAAAGTAGTTGTGCATGTCGAGTCAGAAGCCTCTAGAAGCTGTTCGATGTCTGTCTGAGGGACATTTGGCCTCTTATGCTGCacttccaaacacacacacgactgtTGTTATAGCAGCTCACTTTTTGGGTTGAGGCTGAACCATGGTGGGTGGGGGGATTGGCTGGGTGAGGAGATATTAACTACCACAGACACTCTCACTTCGTTCAGACATTGCACACACACGCTGCCACCCCTGGTCCTGGCCTGCCTGTCATTTTGATGTCTAGTCCTGTATTTAACTGACATTCATTGTTCTTCTAGATCCAGCAGACAGTGGTTTCAGTCTGACAGTCAGGCCGGTCGCGCTGGTTCTCTCGTCCTATTGGAGTCTCCTCGCTCTCATTTTACTCATATGTTCCTTGTTCATTTGATGACCATGTAAAAGCTAATGATTCCATCACTCCAAATCTTAATAAATGGATTTGTTACATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583211 lncRNA downstream 18500 46442663 ~ 46442863 (-) True G514113
TU583209 lncRNA downstream 20421 46440564 ~ 46440942 (-) True G514111
TU583064 lncRNA downstream 268000 46193012 ~ 46193363 (-) True G513975
TU583063 lncRNA downstream 268483 46192330 ~ 46192880 (-) True G513974
TU583062 lncRNA downstream 269177 46191965 ~ 46192186 (-) True G513973
TU583235 lncRNA upstream 16035 46487166 ~ 46549791 (-) True G514134
TU583180 lncRNA upstream 38916 46510047 ~ 46512128 (-) True G514085
TU583258 lncRNA upstream 54877 46526008 ~ 46527080 (-) True G514155
TU583289 lncRNA upstream 102110 46573241 ~ 46574236 (-) True G514184
TU583481 lncRNA upstream 330446 46801577 ~ 46801846 (-) True G514363
XM_036980251.1 mRNA downstream 30756 46367701 ~ 46430607 (-) False LOC110526044
XM_021606631.2 mRNA downstream 101381 46263121 ~ 46359982 (-) False apba1a
XM_021606632.2 mRNA downstream 101381 46263121 ~ 46359982 (-) False apba1a
XM_021606633.2 mRNA downstream 101381 46263121 ~ 46359982 (-) False apba1a
XM_021606637.2 mRNA downstream 101381 46263121 ~ 46359982 (-) False apba1a
XR_002473865.2 mRNA upstream 505264 46976395 ~ 46980777 (-) False LOC110526055
XM_021606655.2 mRNA upstream 574362 47045493 ~ 47056805 (-) True utp15
XM_036981752.1 mRNA upstream 875703 47346834 ~ 47349012 (-) True LOC118965029
XM_036981754.1 mRNA upstream 880580 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 1036032 47507163 ~ 47511010 (-) True LOC118964878
TU583053 other downstream 31003 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 100477 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1184976 45274638 ~ 45276387 (-) True znrf3
TU580171 other downstream 2249540 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 2250698 44209338 ~ 44210665 (-) False nf2a
TU583552 other upstream 439527 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 545031 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 1503662 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1792862 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1821715 48292846 ~ 48297527 (-) False LOC110512142

Expression Profile