RNA id: XM_036980251.1


Basic Information

Item Value
RNA id XM_036980251.1
length 4398
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110526044
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46367701 ~ 46430607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTAATTAgattaggtttaaaatctgattttaagaagatacattgtagaaataggcggagTTTATGACTTTGTGTCTGGTATCTAGTGACGGCCCTGGTGTGGCAGAGTTGGTGTAAGAAATGTTGCTACAATGTTACCATGGTGAAACTTGTTTTAAACATGCTCATCAAAGATTTTTGCCTAGTGTGTTCATTTTTAATGACCCGGATGAACATGATGACGTCATCAGTGCACAAAAATGGCAGAGTcggaggaggaggatgtcttgGTCCAGAGAGTTGTCAAAGATATCAATAACGCCTTCAAGAGAAATCCCAATATtGATGAGATAGGTCTGATCCTGTGTCCTGAGGCCAGGTACAACCGCAGCCCCATCGTCTTGGTAGAGAACAAGTTGGGGGTGGAGAGCTGGTGTGTCAAGTTCCTGCTACCCTATGTCCACAACAAACTACTGCTCTACAGGCAGCGCAAACAGTGGCTAGACAGGGAAGctctggtggacattactTGCACTCTGCTGCTGCTCAACTCAGACTTTACCACCGCTTGGAATGTCAGgaagGAGCTGCTGCAATGTGGCGCCCTAAATCCAGAGAGAGACCTGTACCTGGGAAAACTGGCCCTCACCAAGTTCCCCAAGAGCCCCGAGACATGGATACACAGGCGCTGGGTACTACAGCAGGTGCTACGGGAGTGTTCTCCATCCAGCTCGGACAGGAAGGAGCAGCGTGACAGTGGCCTGCGTGACGCAGCAGAGAGGACTCGGCTTAGTGAGCGCCTCCACAGGGTTCTACACGACGAGATGAAGGTATGCGCCGACGCCGCCAGCCGCTACCCTAGCAACTACAACGCCTGGTCGCACCGTATCTGGGTCCTGCAGAACATGGCCCAGGGCAACCTGAAGGTCCTCCATGATGAGCTGTCCTCCATGCGTGAGTGGGTCTCCATGCACGTGTCGGACCACAGTGGCTTTCACTACCGCCAGTTCCTGCTCAAGGCCCTGGTCAGGGAGCTCAGCCAGTCCATGCACCACCACCATGCCCCTTGGCCCAGCCCCGGCAGCTCCAGCCCTCGCAGTCCCAGCCCGGAACCCCAGCCAGGCCACCCCCACCACCAGGCTAACGGAGAGGCCACAGCAGcagccccctgcctctctcccgcCACCCCAGAGGACCAGTCCTCAGTGCCGGCAGTGCCCCAGCTCTTTCACCAGGAGATGGAGCTGTGTACTGACCTCATCCAGTCCTTCCCCGGACACGAGACACTCTGGTGTCACAGGCGACACGTCTTCTACCTTTGGCACCACTGGAGGCGGGACCACGATCACCACGATGGCCAGGGCTGTGGCAGTGAGTCTCCCCAGCTGAACCACACTGGCGCTGGGCTGAGCAGCTACCCTCACACAGCCTCCCCTAGAGGAGTGGGTCTAGACAGGGTGGAGAGCAGGAACGGACAGACTCAGGAGGGTCAGAATGCCATGGAGGTGGACGGGGTCGGGGTCCCAGACCCCCGCGACACTAAGCGTCTGAAGCGGGGTCCCCCTGACCCCTACCCCCCCGCCCTGCCCTCAGAGCACGGTTTCATAGCCAGCGTCCTGGACGGCTGCCGCTCCCACGAGCAGGGATGCTTCGCCCTTGCATACAGGAAGTGGCTAGACTCTGTGATTGGTCAGTGAGAGATGGACGGACAAGGTCATTGGTCAGTGAAAGGAGACGCTTTCTACTCCACGGGAGATGGGTTACGGTTTAAATTTGCCCCTCttgcacagatctaggatcagcttactctcacccaacccctaaccttaaccattagggcAAGAACTGTAAAATACTGTCCCTAGATCAGCGTCTAGTGGCTGGTAACATTATGCTCATCTTGAAGGCTCTGGAAGGGGGCTGGGGGATCTCAAAGTTATTTGTGGCCCCTCCCGTCTTCCTGGAAATACCTGGACTCTGATTTGTCGGCAGAGCTTTGTCTGAGCCAATCCCCTTTTCAGAATGGAAATCTGAGTGTGGCTTTGCTCTGAGTCGTTCCACCTCAAAGCACAAGAAAGAGGACCACCAGATTtttctgaaattgtttctgtagTTAGTAAGAGGAGATACGATTAGCATTCCTgtaacattattttgttgaaatataattagaTCTCTGAAATATTAAGCGAATTGATGTCATCCAAattgaccattttaatttataAGATTCAGATTGTAGTCAAATATAGTACCCAACATCCAATTTTGGCCAAACATCTTCCTACCAATGCATCCCCCAAAAGATGTCAAAGACCACCCACGGACCCCCTACACCCcatgccaatcccaccccaacaaccagtatacagtatcagctgtctatgtttgacaagtagtctgaagctgtggcttggagtattgcttctCCATACTAAGTAATGTATTCCCTGTGCATCTGGTGATGTTTCTTTCCTCCCTGTTCAGAGAAATGAGTAATTAAAGTGGCTTGCATTGGTTATTAAGCAACAAAAGTGAAGCTTGTGCAACTATGGGGAAAAACAGACCTgtttggcttagattgttgacaacatgtgaactatatttagtctccaaatgTTTGTTGAACacataaatacattttcacaatgagcacttgttgactctcaaatacattgttacagttgttagTTAGCATtttttttgccatattagcattgacatgaaatatgtcaaaacacctcaaaacatgacatggtatcaagaacacactccctacactcgcaataacatctgctaaccatgtgtatgtgacctgaAACGAGACACATACAATTCCCCACATGGTAGCTTCTTGTCATTGTCACCGTTCAGAATCATTACAAAGCACATCTTCAGGCCATAACGATGTGTGTGTCATTTTTGTGACTTTATCTGCCAACCGGTCTATAGATTTTTACCACTAAATGCCACTGTTCCTGCTTTTCCACCACTCTTTTATCCATTTTGCTGGTCTCATGTGTTTATATCACAATATTTCATTTTACAACTTTGGGTTGAAAACCAATAGATTTGTCTcattattaaaataaattgtGTGGTCCTCACAATTCAAGCCGgtcctccatgaaagcaattcAGCTTGTTCTTATAGCAACTTAATGCTGAATACCAACTCTTCTTGAATAGTCCAACAAGTGGCTGCTCTCTGAGAGGGCTATCCCGATGCAATTCTCATATGAAGACTTTTCCTTACAAGCCAAAAACTTTGATGGAGAAATTGGCTAGGAACTAAATGTTGTGACAGCCTTAATAAAGTAATTAATTGCTTGGCGGTCTTATGTGTTTCAATAAAATGATCAGGAAACAGCTCTATAAAAGAATAAAAGAGTGTGATGGTATAGCAGGAACAGTGGCATCTAGTGGTCAAAACTTGGTACTTTCACACTACTTCATGGTAAATAATGCAAACGACTTCAATACTATCAGGGGGGAAAAACATCAGTTTCAtagggaatacattacatagtatgGAAAAGCAATACTCTATGTAGCGTCATACTACTTATCAATCATGGAGAACTGATACTGAATACTGGTTGGGGGTGCGTGGGTGgcttttacattttttgggggggattcctCGTGTCTTACTCATTGGTAGGAAgaagtttggtccaaatcggatgtttaggactatatttattgaatattatctgaatcCTAAATTGCCGATTTGGGTGCAATTAATTAGCCTAATTTCTCCAAGATAAAATGTAAACAAAATAATGCTTCAGAAATACCTATCTTACCTGTTTCTTACTACAGAAACATTTtgagaacaatctgagatggtgggtgtcatggcttgctgaaataaTATGGAACGACTTCTCTGGAAGAGTATGGCTCGTATGGTCTGTTAGTAGCTTAGTTCAGGTACCTCAATACCTCAGGTCTCTTTCAATGTTAGGGACTGGAACAATTATGTCAACCAATTCTGTCTGTCATTTGAGTTTTTTTCACTTAAGAGATGTATTCTTCCGGTATCTTTCTTTTGTCTTCCAGTAACTAAATGTATTGTAGCAGAATAGGTTACATGAAGCTGCCAGGTTACAGGAGGCTATTCATCACAAATGTTGTTATCAGGTCAATTCTGCAGAATTAAACTAAGGACTATAGTGAGATGAGCAGTGCAGCAAATCATTCATGGTCAACATacaaaaacaaagaacaaaaaaCTAGCAAAGCCATTATATGCCGATACCGATATGTCGTGCATCCCTACGGACAACTAAACAACATTTAGACTGAGCACAACCATGAACCAATGAAACTCATGTTGTAGCTCTCAGAGAAATTGAAGTTTTTTGCAAGGAGAGAGGAAAGCAAATAAAATCTAGCCTAGAGAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU583064 lncRNA downstream 174338 46193012 ~ 46193363 (-) True G513975
TU583063 lncRNA downstream 174821 46192330 ~ 46192880 (-) True G513974
TU583062 lncRNA downstream 175515 46191965 ~ 46192186 (-) True G513973
TU583061 lncRNA downstream 175929 46191446 ~ 46191772 (-) True G513972
TU583048 lncRNA downstream 183014 46184418 ~ 46184687 (-) True G513960
TU583209 lncRNA upstream 9957 46440564 ~ 46440942 (-) True G514111
TU583211 lncRNA upstream 12056 46442663 ~ 46442863 (-) True G514113
TU583235 lncRNA upstream 56559 46487166 ~ 46549791 (-) True G514134
TU583180 lncRNA upstream 79440 46510047 ~ 46512128 (-) True G514085
TU583258 lncRNA upstream 95401 46526008 ~ 46527080 (-) True G514155
XM_021606631.2 mRNA downstream 7719 46263121 ~ 46359982 (-) False apba1a
XM_021606632.2 mRNA downstream 7719 46263121 ~ 46359982 (-) False apba1a
XM_021606633.2 mRNA downstream 7719 46263121 ~ 46359982 (-) False apba1a
XM_021606637.2 mRNA downstream 7719 46263121 ~ 46359982 (-) False apba1a
XM_021606635.2 mRNA downstream 69157 46263121 ~ 46298544 (-) False apba1a
XM_021606642.2 mRNA upstream 30756 46461363 ~ 46471131 (-) False rnf215
XM_021606644.2 mRNA upstream 30756 46461363 ~ 46471131 (-) False rnf215
XM_036980253.1 mRNA upstream 30756 46461363 ~ 46471131 (-) False rnf215
XM_021606643.2 mRNA upstream 30756 46461363 ~ 46471132 (-) True rnf215
XR_002473865.2 mRNA upstream 545788 46976395 ~ 46980777 (-) False LOC110526055
TU583050 other downstream 6815 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 1091314 45274638 ~ 45276387 (-) True znrf3
TU580171 other downstream 2155878 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 2157036 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 2157036 44209465 ~ 44210665 (-) True nf2a
TU583552 other upstream 480051 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 585555 47016162 ~ 47016496 (-) True G514777
TU584295 other upstream 1544186 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 1833386 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 1862239 48292846 ~ 48297527 (-) False LOC110512142

Expression Profile