RNA id: TCONS_00032487


Basic Information

Item Value
RNA id TCONS_00032487
length 1764
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_016511
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32215272 ~ 32262287 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAATCCATCACCATCATCTTTGCTTCGTCGACAACGCGCGCGTTTTGTCGCTCTCCTCGCTCTCAGTCTGTTACCAGCAGCTTATCTGAGCTCAAAACAACATGACTGAAAGCAAAATTATCCACAACAGACACAAAGACCGCTACTAGACGCATAGTAAAACTAGTCTGCTTCCTCTCTCGAAATCAATTCCTTTTATAGATGTAGGCAGAGCCTCTTTAGCGCTCAACCTGCGCGTCAAACGCAACGCTTCTGATGGGCCAATCCGGAAAATGTAGACACACACACGCCACATCTTCACAATGATCCGCTGAGCAGGGTGTTCTTCAGCGGTTCCCCATATTTACATTTCTCTCAGTTCACTGGAAATTAAGGGCTCTGACAGGTCGGGATGGGGAATCTGATAAAGGTTCTCACGCGAGACATCGACAACAACGCAGGGAACTTTTTCCTGGACTTTGAAAATGCCAAGCCCACAGAAGCGGAGAGAAGGGTTTGGGAGGAGGTCAATGGGGTGCTGAGAGAGGCTGCGATCATTCTTCAGGACCTGCAGTCATACAGCGGAGCCGGTGAAGCCATCAGACAGGCCATACAGCATCCCAGTGATGAGCGTGTGCAGGAGCAAGCGTGGGCCGCTGTGGTCCCGCTGGTTGGCAAACTAAAGAAGTTTTATGAGTTCTCACTAAAACTGGAAGACACTCTGCAGAACCTGCTGGAGTACCTCACCAGCTCACGCTGCAGCCCAACTCAGCATCTGGAGCAGGAGCAGGCTCTGGCACGCCAGTTTGCTGAGATTTTACATTTCACGCTGCGCTTCGATGAGCTCAAGATGACCAACCCGGCCATCCAGAATGACTTCAGCTACTACAGAAGAACCCTGAGCCGCATGCGCATCATCAACCAAACTGCAGAGGAGCATAATGAGGTCGACAACGAATTGGCCAATCGCATGTCTCTCTTCTACGCCAATGCCACGCCCATGCTGAAAACGTTAAGCGATGCCACGACTAAATTTGTATCAAAGCATGCAGAACTACCTGTAGAGAACACAACAGATTGTCTGAGCACGATGGCAAGTGTGTGTAAAGTCATGTTAGAGACACCGGAGTACCGCAGTCGTTTTGCCAGTGAGGACACAGTGTTATTCTGTCTGCGTGTGATGGTGGGAGTGATCATCCTTTACGACTATGTTCATCCGGCTGGAGCATTCGTCAAATCCTCCAAAATCGATATGAAAGGATGCATTAAAGTTCTGCGATATCAGCCGGCCAACAGTGTGGAGGGGCTACTCAATGCCCTCAGGTACACAACGAAACATTTGAACGATGAGTCTACCTCCAAGCAAATCAAAAACATGTTACAAGCTTGACCGTTTCTGCCGTAAAAAGTATTACTTCTCAAATAGACTGGACGAGACGCTTCCACAGTTTTAACTCGACGGGAATAGCCATGTGTCATGTGGCAGCTACTGTTATCAGTCTGTTTTTTACTGTTGTagtttgttttctattttactCTGATAGACTTCAAGTCATGTGTGGCCTTTAGATTTCAAAGACGCTTCTTTTGTTGTGTTCCACAAAGAGGAGCTTAATTCATTCCCTTCCCGTGTTTCCTACAGTTTACTGAGTGCTCAGGCAGGAAAACAACAAATATTGCATTTCGCTTTTTATAAATGAGAtaatttactgtgattttttttttacattttttttattattaacataagtCTTTCATATTGAATAAAGCTATTTTAACCAA

Function

GO:

id name namespace
GO:0050870 positive regulation of T cell activation biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9537 Predicted to be involved in positive regulation of T cell activation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in membrane. Is expressed in epidermis; periderm; pharyngeal arch 3-7 skeleton; and pronephros. Orthologous to human CYRIB (CYFIP related Rac1 interactor B).

Ensembl:

ensembl_id ENSDART00000039717

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033870 lncRNA downstream 13868 32194825 ~ 32201587 (-) True XLOC_016510
TCONS_00032483 lncRNA downstream 316548 31897668 ~ 31898907 (-) True XLOC_016508
TCONS_00033869 lncRNA downstream 332277 31882407 ~ 31883178 (-) False XLOC_016505
TCONS_00033868 lncRNA downstream 600707 31612853 ~ 31614748 (-) True XLOC_016485
TCONS_00032444 lncRNA downstream 602178 31612853 ~ 31613277 (-) False XLOC_016485
TCONS_00032504 lncRNA upstream 116290 32378577 ~ 32384643 (-) False XLOC_016514
TCONS_00032511 lncRNA upstream 213574 32475861 ~ 32477576 (-) False XLOC_016516
TCONS_00033872 lncRNA upstream 213574 32475861 ~ 32481923 (-) False XLOC_016516
TCONS_00032512 lncRNA upstream 215048 32477335 ~ 32481923 (-) True XLOC_016516
TCONS_00032525 lncRNA upstream 348349 32610636 ~ 32613078 (-) True XLOC_016522
TCONS_00032484 mRNA downstream 96259 32115851 ~ 32119196 (-) True XLOC_016509
TCONS_00032480 mRNA downstream 278450 31891335 ~ 31937005 (-) False XLOC_016508
TCONS_00032482 mRNA downstream 278489 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032481 mRNA downstream 278489 31892365 ~ 31936966 (-) False XLOC_016508
TCONS_00032462 mRNA downstream 382108 31830183 ~ 31833347 (-) True XLOC_016490
TCONS_00032492 mRNA upstream 928 32263215 ~ 32356539 (-) False XLOC_016512
TCONS_00032493 mRNA upstream 5611 32267898 ~ 32352946 (-) False XLOC_016512
TCONS_00032494 mRNA upstream 5741 32268028 ~ 32353044 (-) False XLOC_016512
TCONS_00032497 mRNA upstream 94939 32357226 ~ 32384683 (-) False XLOC_016514
TCONS_00032498 mRNA upstream 95319 32357606 ~ 32386791 (-) False XLOC_016514
TCONS_00032479 other downstream 326047 31888975 ~ 31889408 (-) True XLOC_016507
TCONS_00032478 other downstream 329436 31885581 ~ 31886019 (-) True XLOC_016506
TCONS_00032477 other downstream 332607 31882411 ~ 31882848 (-) True XLOC_016505
TCONS_00032476 other downstream 334823 31880194 ~ 31880632 (-) True XLOC_016504
TCONS_00032475 other downstream 337630 31877471 ~ 31877825 (-) True XLOC_016503
TCONS_00032495 other upstream 31114 32293401 ~ 32293516 (-) True XLOC_016513
TCONS_00032496 other upstream 93141 32355428 ~ 32356050 (-) True XLOC_016512
TCONS_00032499 other upstream 95608 32357895 ~ 32361774 (-) False XLOC_016514
TCONS_00032501 other upstream 95752 32358039 ~ 32361463 (-) False XLOC_016514
TCONS_00032537 other upstream 402837 32665124 ~ 32666215 (-) False XLOC_016527

Expression Profile

//