RNA id: TU539789


Basic Information

Item Value
RNA id TU539789
length 793
lncRNA type intronic
GC content 0.35
exon number 3
gene id G474793
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12393453 ~ 12394430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaagagcagtgtGCGAGTTTCTTCTTTTTCTCCAAATCTTGAAAGATCATATGAATTCTGAGTTAGATACCTGCAACCACCTCTTTCTATTGCAACACATTCCCAAACATAGCAAGAGTGGAGAGATGCTTTCAAAATAACTTCATTCTTCCAGACCATACgtcatacatcatacatcatacaccatacaccatacaccatacatcatacatcatacacaatacaccatacatcatacatcatacaccatacatcatacatcatacatcatacatcatacaccatacaccatacatcatacatcatacatcatacaccatacaccatacatcatacaccatacatcatacatcatacatcatacacaatacaccatacatcatacatcatacaccatacatcatacaccatacatcatacaccatacaccatacatcatacaccatacaccatacatcatacaccatacatcatacatcatacaccatacaccatacatcatacaccatacaccatacatcatacatcatacaccatacatcatacatcatacaccatacatcatacaccatacatcatacaccatacaccatacatcatacaccatacatcatacatcatacaccatacatcatacatcatacatcatacaccatacatcatacatcatacaccatacatcatacaccatacatcatacatcatacaccatacatcatacatcatacaccatacatcatacatcatacacaatacaccatacatcatacatcatacacaatacaccatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539722 lncRNA downstream 86112 12307153 ~ 12307428 (-) True G474731
TU539719 lncRNA downstream 88010 12305263 ~ 12305530 (-) True G474728
TU539713 lncRNA downstream 108138 12285095 ~ 12285402 (-) True G474722
TU539648 lncRNA downstream 110944 12281639 ~ 12282596 (-) True G474664
TU539631 lncRNA downstream 260911 12132354 ~ 12132629 (-) True G474649
TU539806 lncRNA upstream 36820 12431250 ~ 12432043 (-) True G474807
TU539813 lncRNA upstream 51323 12445753 ~ 12446148 (-) True G474814
TU539829 lncRNA upstream 84025 12478455 ~ 12478696 (-) True G474830
TU540311 lncRNA upstream 205550 12599980 ~ 12600688 (-) True G475245
TU540319 lncRNA upstream 216038 12610468 ~ 12610740 (-) True G475252
XM_021605276.2 mRNA downstream 121984 12258615 ~ 12271556 (-) False gkap1
XM_021605289.2 mRNA upstream 194630 12589060 ~ 12623505 (-) False rtkn
XM_021605287.2 mRNA upstream 194630 12589060 ~ 12650568 (-) False rtkn
XM_021605288.2 mRNA upstream 194630 12589060 ~ 12650573 (-) False rtkn
XM_021605283.2 mRNA upstream 194630 12589060 ~ 12703820 (-) False rtkn
XM_021605282.2 mRNA upstream 194630 12589060 ~ 12703823 (-) False rtkn
TU539592 other downstream 363930 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 437003 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 650782 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 791543 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 1009094 11379527 ~ 11384446 (-) True LOC110525252
TU539726 other upstream 30031 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 557822 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 634955 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 802885 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1636985 14031415 ~ 14087681 (-) False fam172a

Expression Profile