RNA id: TU540311


Basic Information

Item Value
RNA id TU540311
length 637
lncRNA type intronic
GC content 0.42
exon number 3
gene id G475245
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12599980 ~ 12600688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGGTTTTTAAGTGCAGTGGGAAGATAAGGAAGCCTAAGATGGCAATGATAGCGTGTGCACTTttgatgcatgcacacacacacccgcactcACACTCCCAAATACATTTAGTGTAAAACGATACACTCACACACCCAAATACATTTAGTGTAAAACGATACACTCACACTCCCAAATACATTTAGTGTAAAACGATACACTCACACTCCCAAATACATTTAGTGTAAAACAATACACTCACACTCCCAAATACATTTAGTGTAAAACGATACACTCACACTCCCAAATACATTTAGTGTAAAACGATACACTCACACTCCCAAATACATTTAGTGTAAAACGATACACTCACACTCCCAAATACATTTAGTGTAAAGCGATACACTCACACACCGTGCTGCATGTGAAGAACACTCTTAAAGCTACTTAGGCCAGACTCTCACAGTGCGGCTGTCCAAGTCCAACAGCTGCTAGAGTTGGTGTTGTTCATCCCAGTCTGTCCAGTTTGACAGCCAAACCCACAATCCTCCAATAATTTACTCTGTAGCCTCCGTCTGTTTAAAACATCCACAGAGGGTGCAGATAGTGCCAGAGGAGTTCTCAAGTGGGGAAATCTAGTCAAATGTCTTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539829 lncRNA downstream 121284 12478455 ~ 12478696 (-) True G474830
TU539813 lncRNA downstream 153832 12445753 ~ 12446148 (-) True G474814
TU539806 lncRNA downstream 167937 12431250 ~ 12432043 (-) True G474807
TU539789 lncRNA downstream 205550 12393540 ~ 12394430 (-) False G474793
TU540319 lncRNA upstream 9780 12610468 ~ 12610740 (-) True G475252
TU540429 lncRNA upstream 209189 12809877 ~ 12810217 (-) True G475359
TU540445 lncRNA upstream 260978 12861666 ~ 12871277 (-) False G475375
TU540446 lncRNA upstream 264889 12865577 ~ 12871277 (-) False G475375
TU540447 lncRNA upstream 264889 12865577 ~ 12871277 (-) True G475375
XM_036979421.1 mRNA downstream 44620 12310179 ~ 12555360 (-) False LOC110525279
XM_021605276.2 mRNA downstream 328424 12258615 ~ 12271556 (-) False gkap1
XM_021605290.2 mRNA upstream 111604 12712292 ~ 12715896 (-) False smn1
XM_036979423.1 mRNA upstream 111604 12712292 ~ 12715896 (-) True smn1
XM_021605293.2 mRNA upstream 121065 12721753 ~ 12770314 (-) True si:dkey-40c11.2
XM_036979427.1 mRNA upstream 191982 12792670 ~ 12815018 (-) False rhobtb4
XM_036979424.1 mRNA upstream 191982 12792670 ~ 12824383 (-) False rhobtb4
TU539726 other downstream 174745 12424461 ~ 12425235 (-) True LOC110525279
TU539592 other downstream 570370 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 643443 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 857222 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 997983 11601515 ~ 11601997 (-) True G473930
TU540491 other upstream 351564 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 428697 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 596627 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1430727 14031415 ~ 14087681 (-) False fam172a
TU542805 other upstream 2353405 14954093 ~ 14956050 (-) True G477528

Expression Profile