RNA id: TCONS_00032628


Basic Information

Item Value
RNA id TCONS_00032628
length 387
RNA type TR_V_gene
GC content 0.39
exon number 2
gene id XLOC_016602
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36278980 ~ 36279485 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAcaccctttgtttttattttgagtttttcaCTTGCAGGTGATGTTTTAGGAAATGTCATCATACCGGTCCACTCTGAAGTATATAAAACAGAAAAGGAAACTATATCTCTGTCCTGCAACTACTCTTCAGCATCGAGTCTCTACTGGTATCGTCAATATCCTAAATCAACACCTGAATTTCTTTTTGTCATTCTACATGCTACAGGGAAAGTTTTACAGAAATCTGATATTGTGGATCAAGATCCTCGATTCTCTGGAAAACTGAAtgaggagaaaacccacacgagccTTAATATCTCCTCTGCTAAAGTGACAGACTCAGCAATGTATTTCTGTGCCATGGAGCCCACAGTGACAGGAAACACAAAAACACTGCACAAAAAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-24 No description available

Ensembl:

ensembl_id ENSDART00000169436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033881 lncRNA downstream 200342 36076196 ~ 36078638 (-) True XLOC_016555
TCONS_00032580 lncRNA downstream 545228 35728589 ~ 35733752 (-) True XLOC_016553
TCONS_00033880 lncRNA downstream 545753 35728589 ~ 35733227 (-) False XLOC_016553
TCONS_00032579 lncRNA downstream 657113 35615395 ~ 35621867 (-) True XLOC_016552
TCONS_00033381 lncRNA downstream 662893 35615395 ~ 35616087 (-) False XLOC_016552
TCONS_00033382 lncRNA upstream 99754 36379239 ~ 36425603 (-) True XLOC_016619
TCONS_00033882 lncRNA upstream 385285 36664770 ~ 36673919 (-) False XLOC_016631
TCONS_00032659 lncRNA upstream 391767 36671252 ~ 36673918 (-) False XLOC_016631
TCONS_00032660 lncRNA upstream 391820 36671305 ~ 36673918 (-) True XLOC_016631
TCONS_00033883 lncRNA upstream 467693 36747178 ~ 36753894 (-) False XLOC_016633
TCONS_00032581 mRNA downstream 238160 36026183 ~ 36040820 (-) True XLOC_016554
TCONS_00032577 mRNA downstream 711870 35510048 ~ 35567110 (-) False XLOC_016551
TCONS_00032576 mRNA downstream 712005 35509418 ~ 35566975 (-) False XLOC_016551
TCONS_00032575 mRNA downstream 712042 35509418 ~ 35566938 (-) False XLOC_016551
TCONS_00032574 mRNA downstream 1175911 34986201 ~ 35103069 (-) True XLOC_016550
TCONS_00032644 mRNA upstream 67445 36346930 ~ 36350082 (-) True XLOC_016618
TCONS_00032645 mRNA upstream 210620 36490105 ~ 36490570 (-) True XLOC_016620
TCONS_00032646 mRNA upstream 214364 36493849 ~ 36494308 (-) True XLOC_016621
TCONS_00032647 mRNA upstream 217151 36496636 ~ 36497113 (-) True XLOC_016622
TCONS_00032648 mRNA upstream 220401 36499886 ~ 36500347 (-) True XLOC_016623
TCONS_00032627 other downstream 1200 36276985 ~ 36277780 (-) True XLOC_016601
TCONS_00032626 other downstream 5337 36273162 ~ 36273643 (-) True XLOC_016600
TCONS_00032625 other downstream 8700 36269807 ~ 36270280 (-) True XLOC_016599
TCONS_00032624 other downstream 12084 36266386 ~ 36266896 (-) True XLOC_016598
TCONS_00032623 other downstream 14124 36264323 ~ 36264856 (-) True XLOC_016597
TCONS_00032629 other upstream 13411 36292896 ~ 36293427 (-) True XLOC_016603
TCONS_00032630 other upstream 14335 36293820 ~ 36294338 (-) True XLOC_016604
TCONS_00032631 other upstream 17816 36297301 ~ 36297784 (-) True XLOC_016605
TCONS_00032632 other upstream 22794 36302279 ~ 36302732 (-) True XLOC_016606
TCONS_00032633 other upstream 23908 36303393 ~ 36303842 (-) True XLOC_016607

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01043951_00000946_00003151.mRNA True 777 mRNA 0.40 4 CI01043951 841 ~ 3151 (-)
eurasian perch (Perca fluviatilis) unassigned_transcript_219 True 72 tRNA 0.53 1 NC_053115.1 35936938 ~ 35937009 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_219 True 1018 V_gene_segment 0.40 2 NC_056700.1 16858568 ~ 16859696 (-)