RNA id: TCONS_00032759


Basic Information

Item Value
RNA id TCONS_00032759
length 3218
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_016690
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38997357 ~ 39015130 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCATTGAGGAAGTTCCACGTCACATTTGTCTGCTGTGCACAAAACTGCAGCCGTAAAAACACATCAGACTCTCACTGTGGATGATATAAAAACATTGCAGCTGAAGGAGACCAAACCCAACAAACGCAAAAATGCCTCTGAGGCTGGACATCAAGCGCAAACTCACGGCTCGATCTGACCGTGTCAAAAGCGTAGACCTTCATCCGTCCGAACCATGGATGCTGGCCAGTTTGTACAATGGCAGTGTCTGTGTGTGGAACCATGAAACACAAACTCTGGTTAAGACTTTTGAGGTTTGTGACCTTCCGGTGAGAGCTTCCAAGTTTGTTGCCAGGAAAAATTGGGTCATAACTGGCGCTGATGACATGCAAATCCGAGTTTTCAACTACAACACTCTAGAGCGAGTACACATGTTTGAGGCCCATTCAGATTATATTCGCTGCATCGCTGTGCATCCCACCCAGCCCTACATCCTCACAAGCAGTGATGACATGTTGATAAAGCTGTGGGACTGGGAGAAGAAATGGTCGTGCAGTCAGGTGTTTGAGGGCCACACACACTACGTGATGCAAATCGTCATCAACCCCAAAGACAACAACCAGTTTGCTAGTGCGTCGCTGGACAGAACAATAAAGGTTTGGCAACTGGGTTCATCTTCTCCCAACTTCACTCTGGAAGGTCATGATAAGGGGGTGAACTGCATTGATTATTACAGTGGAGGAGATAAACCTTACCTCATCTCCGGAGCCGATGACAGACTGGTCAAAATTTGGGACTATCAGAATAAGACATGTGTGCAGACGCTCGAGGGACATGCTCAGAATGTGTCCTGTGTAAACTTTCACCCAGAGCTGCCCATCATCATCACTGGATCTGAGGACGGCACAGTCCGGATCTGGCACTCCAGCACTTACCGTCTAGAAAGCACCTTGAACTATGGAATGGAGCGGGTTTGGTGTGTGTCTGGCTTGCGGGGCTCCAACAGCGTCGCATTGGGCTATGATGAAGGCAGCATCATTATCAAGCTCGGCCGTGAGGAGCCAGCCATGTCAATGGACACCAACGGAAAGATCATTTGGGCCAAGCACTCTGAGATTCAGCAGGCAAACCTCAAAGCCATGGGGGATGCAGAAATCAAGGATGGTGAGAGGCTGCCACTGGCAGTCAAGGACATGGGCAGCTGTGAGATCTACCCTCAAACCATCCAGCACAATCCTAACGGCAGGTTTGTGGTGGTGTGTGGAGATGGAGAGTACATCATCTACACCGCCATGGCTCTGAGAAACAAGAGCTTTGGTTCTGCACAGGAGTTTGTTTGGGCCCATGATTCATCCGAGTATGCAATCCGGGAAAGCAGCAGTGTGGTGAAGATCTTCAAAAATTTTAAGGAGAAAAAATCTTTTAAGCCAGATTTTGGAGCAGAAGGCATTTATGGAGGCTTCCTACTGGGTGTTCGATCTGTGAATGGTTTGGCTTTCTATGACTGGGAAAACACGGAGCTGATTCGACGAATTGAGATCCAGCCTAAACATATTTTCTGGTCAGACTCCGGTGAGCTGGTGTGCATTGCCACAGAAGAGTCCTTCTTTATCCTGCGCTACCTGTCAGAGAAGGTGGCCGCATCACAGGAGAACAATGAGGGGGTTACTGAAGACGGTATTGAAGATGCTTTTGAGGTTCTGGGAGAGATTCAGGAGGTGGTGAAGACTGGTCTGTGGGTGGGAGATTGTTTCATCTACACCAGCTCAGTCAACCGCCTCAACTACTTTGTTGGAGGAGAGATTGTCACCATTGCTCACTTGGACAGAACGATGTACCTTCTGGGATACATTCCTAAAGATGACCGTCTTTACCTGGGTGATAAGGAGCTGAACATTGTTAGTTATTCTCTCCTGGTGTCTGTCCTGGAGTACCAAACTGCCGTCATGCGCAGAGACTTTGGCATGGCAGATAAAGTGCTGCCCACCATCCCTAAAGAACAGAGAACCAGAGTTGCCCACTTCTTAGAGAAACAGGGTTTCAAGCAGCAGGCTCTGGCTGTGTCCACTGATCCAGAGCACCGCTTTGAGCTGGCGCTTCAGTTAGGAGAGCTGAAAATCGCATACCAGCTTGCAGTAGAAGCTGAGTCGGAGCAGAAGTGGAAGCAGTTGGCAGAGCTGGCCATCAGTAAGTGCCAGTTTGGACTGGCACAGGAGTGTCTTCATCATGCCCAGGACTATGGAGGTCTTCTGCTTCTGGCCACTGCATCTGGCAACGCCTCTATGGTTGCCAAGCTTGCGGAGGGAGCAGAGCGGGACGGCAAAAACAATGTCGCCTTTATGACATACTTCCTGCAGGGAAAATTGGACAACTGTTTGGAACTTCTGATCAAGACCAATCGTCTGCCAGAAGCAGCCTTTCTTGCCCGCACATATCTACCCAGTCAAGTTTCCAGAGTGGTGAAGCTTTGGAGAGAGAGTTTGTCTAAAGTGAATCAGAAAGCAGCAGAGTCTCTGGCAGACCCCACAGAGTATGAGAACCTGTTCCCAGGCCTGAGAGAGGCTTTTGTGGCAGAGCAGTACCTGAAAGAGACCAGCCTCGGCCAAACCAGACCTGCCTCTGACTACCCACTCATCACGCCTAATGAAGAAAGGAACGTGCTGGAGGAGGCCAGTGGTTATGAACCCAAAGGAATTCTCCCTGCTCCCACACAGCTGAAGCAGGAGGTCTCGGAGGATGAAGAGGTTTTGGCCTCAGTCTCATCAGTGTCTGCTGTGAGTTCTGCACAGTCCCAACCTGACCCGAAGCTCCAAGAGAAGACAGAAGAAAAAACTCCTGAAATTACAGCAGCAGAACAGAAGGTCATCGATGAACTTGAGGATGATTTGGATAACATGGAGCTTGATGACATCGACACTACAGATGTCAATCTGGATGACGACTTCCTAGACGACTAAACCATCTGCACTGAAGCATTGAGTTTATTTAAGTGaccaaatgttttgttttgttttttcgttGCTGTTAGAAATGCAGAGCTGAAGTCGGACTGGGTTCATTATAAACACGTTTTTTAGGCCGTACCaccaatggaaaaaaaatgtctgtgatctctttttttttttttttgtacttcttTCTGGACCTTCAATTGACATTTTACCTGTACATCAAGACTTATTGACCATGACAATTCATGGTGCCATTATTCATAATAAAGATAACTACTATACTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061053 somite development biological_process
GO:0030903 notochord development biological_process
GO:0030117 membrane coat cellular_component
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-010724-7 Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axial mesoderm; cardiovascular system; digestive system; fin; and nervous system. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 19. Orthologous to human COPB2 (COPI coat complex subunit beta 2).

Ensembl:

ensembl_id ENSDART00000044331

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032745 lncRNA downstream 771984 38216345 ~ 38225373 (-) True XLOC_016682
TCONS_00033892 lncRNA downstream 802878 38192959 ~ 38194479 (-) True XLOC_016681
TCONS_00033891 lncRNA downstream 851656 38144162 ~ 38145701 (-) True XLOC_016680
TCONS_00032737 lncRNA downstream 855380 38138350 ~ 38141977 (-) True XLOC_016679
TCONS_00033384 lncRNA downstream 1181984 37813663 ~ 37815373 (-) True XLOC_016662
TCONS_00032767 lncRNA upstream 67166 39082296 ~ 39086574 (-) False XLOC_016693
TCONS_00033386 lncRNA upstream 595191 39610321 ~ 39612464 (-) True XLOC_016697
TCONS_00032775 lncRNA upstream 719439 39734569 ~ 39737898 (-) False XLOC_016698
TCONS_00033893 lncRNA upstream 719439 39734569 ~ 39752556 (-) False XLOC_016698
TCONS_00033894 lncRNA upstream 811574 39826704 ~ 39827511 (-) True XLOC_016699
TCONS_00032758 mRNA downstream 5044 38986881 ~ 38992313 (-) True XLOC_016689
TCONS_00032757 mRNA downstream 5053 38985489 ~ 38992304 (-) False XLOC_016689
TCONS_00032756 mRNA downstream 634340 38342298 ~ 38363017 (-) True XLOC_016688
TCONS_00032755 mRNA downstream 660235 38318000 ~ 38337122 (-) False XLOC_016687
TCONS_00032754 mRNA downstream 660235 38318000 ~ 38337122 (-) True XLOC_016687
TCONS_00032762 mRNA upstream 936 39016066 ~ 39017838 (-) True XLOC_016691
TCONS_00032763 mRNA upstream 13207 39028337 ~ 39036604 (-) True XLOC_016692
TCONS_00032765 mRNA upstream 48194 39063324 ~ 39090286 (-) False XLOC_016693
TCONS_00032766 mRNA upstream 53191 39068321 ~ 39086540 (-) False XLOC_016693
TCONS_00032768 mRNA upstream 67791 39082921 ~ 39090258 (-) True XLOC_016693
TCONS_00032743 other downstream 792564 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032691 other downstream 1588200 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032658 other downstream 2323438 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 2326199 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 2665026 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032764 other upstream 47624 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 355681 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 720422 39735552 ~ 39752556 (-) True XLOC_016698
TCONS_00032777 other upstream 911831 39926961 ~ 40026622 (-) False XLOC_016700
TCONS_00032778 other upstream 993608 40008738 ~ 40026622 (-) True XLOC_016700

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_16626200_16639382.mRNA True 3030 mRNA 0.50 21 CI01000004 16625936 ~ 16639382 (-)
bowfin (Amia calva) AMCG00009274 True 3171 mRNA 0.48 22 CM030126.1 31136569 ~ 31148800 (-)