RNA id: TCONS_00033924


Basic Information

Item Value
RNA id TCONS_00033924
length 683
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_016763
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 43378102 ~ 43379093 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTATAGGCATAAGAGGTTTTAATTCCCCCAATTCCAATCGTCATATTAAGTTCACACTTGATCCAGATATGAATAATCTAGATTTAAATTCAACGTCATAAATACTACACAATTTCAGTCTAAAAACATTGCTTTTGACTCAAACGCACATACTCCCCTTCCtgcttctgtctctctctctctttctttttctctctctctctctctctctctctctctctctctctctcacacacacacacacaacaattcaGCCAATCACAGTTCTTGCCTTAATCATGATCTGCCGAAGTCACGGTGATATGGTCGAACAGATGAATGGTGGGGTGAACAGTCCAGATGGATGAACACATGGTGATGTTAGCATTGTTAGCAGATAATGTCAGTGTCAGAGGTGACATGCTCCTGCATGCAGCAGTCTCAGGTTGTTAGCAGTTAGCATTAGCCCATGCCTGGAGGTCATTTATCAGACTTGTCTTATTCCGTCCTGGGAGCTCCCAGAGATCATGGGCTGTATGTCCAGTGATCATGggtgcacacacacagctcacaCACTCACCCAGGGCTGCTCCATGCTGTAGGAGCGATGGCGATCATCGGGTTCAGTCTCCTCCTGTCGGACCTGCTGGAACTCCTGCCGCAAGCGCTGGATTCGGTCGTGGTTACTCGGCGTCAGCCTGtc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033923 lncRNA downstream 391132 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033400 lncRNA downstream 395092 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA downstream 395092 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033398 lncRNA downstream 399490 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033397 lncRNA downstream 441864 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00032871 lncRNA upstream 130409 43509502 ~ 43517018 (-) True XLOC_016764
TCONS_00033925 lncRNA upstream 188052 43567145 ~ 43571656 (-) False XLOC_016766
TCONS_00033926 lncRNA upstream 188981 43568074 ~ 43571670 (-) False XLOC_016766
TCONS_00033927 lncRNA upstream 190593 43569686 ~ 43571760 (-) True XLOC_016766
TCONS_00033401 lncRNA upstream 250660 43629753 ~ 43630083 (-) True XLOC_016770
TCONS_00032870 mRNA downstream 181507 43159817 ~ 43196595 (-) True XLOC_016762
TCONS_00032869 mRNA downstream 186637 43159751 ~ 43191465 (-) False XLOC_016762
TCONS_00032868 mRNA downstream 209810 43159171 ~ 43168292 (-) False XLOC_016762
TCONS_00032866 mRNA downstream 226744 43144938 ~ 43151358 (-) False XLOC_016761
TCONS_00032867 mRNA downstream 226744 43149869 ~ 43151358 (-) True XLOC_016761
TCONS_00032872 mRNA upstream 158753 43537846 ~ 43545342 (-) True XLOC_016765
TCONS_00032873 mRNA upstream 198201 43577294 ~ 43583896 (-) True XLOC_016767
TCONS_00032874 mRNA upstream 206478 43585571 ~ 43605556 (-) True XLOC_016768
TCONS_00032875 mRNA upstream 240462 43619555 ~ 43635777 (-) True XLOC_016769
TCONS_00032876 mRNA upstream 259890 43638983 ~ 43653328 (-) False XLOC_016771
TCONS_00032856 other downstream 415758 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032848 other downstream 673169 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 962314 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 1002993 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1431206 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032894 other upstream 813706 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1143763 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1378956 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1383989 44763082 ~ 44763375 (-) True XLOC_016791
TCONS_00032918 other upstream 1395182 44774275 ~ 44774595 (-) True XLOC_016792

Expression Profile

//