Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00032877 |
| length | 2133 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 12 |
| gene id | XLOC_016771 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 43638983 ~ 43653328 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0007160 | cell-matrix adhesion | biological_process |
| GO:0033627 | cell adhesion mediated by integrin | biological_process |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0008305 | integrin complex | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0098639 | collagen binding involved in cell-matrix adhesion | molecular_function |
| GO:0005178 | integrin binding | molecular_function |
| GO:0019960 | C-X3-C chemokine binding | molecular_function |
| GO:0043236 | laminin binding | molecular_function |
| GO:0001968 | fibronectin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2598 | Predicted to enable collagen binding activity involved in cell-matrix adhesion; fibronectin binding activity; and integrin binding activity. Predicted to contribute to C-X3-C chemokine binding activity and laminin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in several structures, including heart; integument; liver; periderm; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1). |
| ensembl_id | ENSDART00000148454 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033401 | lncRNA | downstream | 9014 | 43629753 ~ 43630083 (-) | True | XLOC_016770 |
| TCONS_00033927 | lncRNA | downstream | 67337 | 43569686 ~ 43571760 (-) | True | XLOC_016766 |
| TCONS_00033926 | lncRNA | downstream | 67427 | 43568074 ~ 43571670 (-) | False | XLOC_016766 |
| TCONS_00033925 | lncRNA | downstream | 67441 | 43567145 ~ 43571656 (-) | False | XLOC_016766 |
| TCONS_00032871 | lncRNA | downstream | 122079 | 43509502 ~ 43517018 (-) | True | XLOC_016764 |
| TCONS_00033928 | lncRNA | upstream | 54452 | 43707467 ~ 43707953 (-) | False | XLOC_016773 |
| TCONS_00032886 | lncRNA | upstream | 172600 | 43825615 ~ 43835502 (-) | False | XLOC_016775 |
| TCONS_00032904 | lncRNA | upstream | 623519 | 44276534 ~ 44282837 (-) | True | XLOC_016781 |
| TCONS_00032909 | lncRNA | upstream | 748065 | 44401080 ~ 44406125 (-) | False | XLOC_016785 |
| TCONS_00032910 | lncRNA | upstream | 750740 | 44403755 ~ 44406122 (-) | True | XLOC_016785 |
| TCONS_00032875 | mRNA | downstream | 3320 | 43619555 ~ 43635777 (-) | True | XLOC_016769 |
| TCONS_00032874 | mRNA | downstream | 33541 | 43585571 ~ 43605556 (-) | True | XLOC_016768 |
| TCONS_00032873 | mRNA | downstream | 55201 | 43577294 ~ 43583896 (-) | True | XLOC_016767 |
| TCONS_00032872 | mRNA | downstream | 93755 | 43537846 ~ 43545342 (-) | True | XLOC_016765 |
| TCONS_00032870 | mRNA | downstream | 442502 | 43159817 ~ 43196595 (-) | True | XLOC_016762 |
| TCONS_00032878 | mRNA | upstream | 25024 | 43678039 ~ 43698531 (-) | True | XLOC_016772 |
| TCONS_00032879 | mRNA | upstream | 52578 | 43705593 ~ 43739740 (-) | False | XLOC_016773 |
| TCONS_00032880 | mRNA | upstream | 56712 | 43709727 ~ 43739559 (-) | True | XLOC_016773 |
| TCONS_00032881 | mRNA | upstream | 89559 | 43742574 ~ 43745146 (-) | False | XLOC_016774 |
| TCONS_00032882 | mRNA | upstream | 90230 | 43743245 ~ 43745175 (-) | True | XLOC_016774 |
| TCONS_00032856 | other | downstream | 676753 | 42962228 ~ 42962344 (-) | True | XLOC_016753 |
| TCONS_00032848 | other | downstream | 934164 | 42672850 ~ 42704933 (-) | True | XLOC_016744 |
| TCONS_00032837 | other | downstream | 1223309 | 42404061 ~ 42415788 (-) | True | XLOC_016740 |
| TCONS_00032833 | other | downstream | 1263988 | 42372009 ~ 42375109 (-) | True | XLOC_016738 |
| TCONS_00032811 | other | downstream | 1692201 | 41945975 ~ 41946896 (-) | True | XLOC_016725 |
| TCONS_00032894 | other | upstream | 539784 | 44192799 ~ 44199697 (-) | False | XLOC_016779 |
| TCONS_00032911 | other | upstream | 869841 | 44522856 ~ 44524381 (-) | True | XLOC_016786 |
| TCONS_00032916 | other | upstream | 1105034 | 44758049 ~ 44760347 (-) | True | XLOC_016790 |
| TCONS_00032917 | other | upstream | 1110067 | 44763082 ~ 44763375 (-) | True | XLOC_016791 |
| TCONS_00032918 | other | upstream | 1121260 | 44774275 ~ 44774595 (-) | True | XLOC_016792 |
