RNA id: TCONS_00034028


Basic Information

Item Value
RNA id TCONS_00034028
length 1450
lncRNA type inter_gene
GC content 0.49
exon number 7
gene id XLOC_017036
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59379166 ~ 59390464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAATTCAGTGTTTCTGTGGCACAGGATCAGTTCAGCTGTTCGGTGTGTCTGGATCTCCTGAAGGATCCAGTCTCCATTCCCTGTGGACACAGTTACTGTATGAGCTGCATCACAGACTGCTGGAATCAGGAGGATCAGAAGAGAGTCTACAGCTGCCCTCAGTGCAGACAGACCTTCAGCCCCAGACCCGCTTTAGCTAAAAACACCATGCTGGCTGAAGTGCtggagaaactgcagaagagcaaACTACAAGCTGCTGGTCCTGCTCAGAGTCCCGCTGCATCTGGAGATGTGGAGTGTGACGTCTGTACTGGAGCCAAAAACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTTACTGTCACACTCATTTTCAGCGCCATCAAGAGATTCACCCAGGAAATCAACACCAAGTGACTGAAGCCACTCACAAATTGAAAGAGATAATCTGTCAACAACACAAGAAACTCCTGGAGATCTTCTGCCGCACTGATCACTGCTGTATATGTTATCTGTGTTTGCTGGATCAACACAAACACCATGACACTGTTTCAGCTGCAGCAGAGAGGACTGAACTACAGAGTTGTCTGGAGGAAACCCAGAGCAGTTTCCAGCAGAGACTCCAGGAGAGACAGAAGGAGCTGGAGGAGCTGAGAGAGGCTGTGGAGTCTCACAAGcGCTCTGCACAGGCCGCAGTGGACCACACCGAGAGGATCTTCACTCAGCTCATCTGCTGGATTGAGAGAAGCCGCTCGGAGCTCACGCAGATGATCAGAGATGGAGAAAAGACTGCAGTGAGTGGAGCTGAAGAACGACTGGAGCGACTGGAGCAGGAGATCAATGATCTGAGGAGGAGAAACGCTGAGCTGGAGCAGCTTTCACACACAGAAGATCACATCCATTTCCTCCAGAGTTTCCAGTCTCTCTCTGTCCCTCCTGGATCTACAGACTCATCCAGCTTTTTTATCAGCTCACAGCTCTCTTTTAATAAAGTTACTGAATCTGTGTCTCGTCTGAGAGACAAACTGCAGCAGTTCTGCACTGAGGAGATGAAGACCATATCTAGCAGAGTGAGCAGCATTACTATCATTTCCACTCCTGAACCAAAGACCCGTGAGCAGTTCCTCCAGTATTTCCAAAAGTTCACTTtggatccaaacacagtgaataaaAGGCTGGTTCTGTCTAAAGGAAACACAGTGGTGGAAAATAAAGATTCAGTCCAGCCGTATCCTGGTCATCCAGACAGATTTACTTTTCGCCCTCAGGTGTTGtgtagagagagtgtgtgtagaCGCTCTTACTGGGAGCTGGAGTGGAGCGGAGATgatggtgtgtttatatcagtgtcGTATAAGAGCaccacattcacacacacactctatcctGGATTCTTGGTTTCTAACACTTCAAAAGTGAAGCTCTGTGATCTGACAGTGTAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034026 lncRNA downstream 258326 59093307 ~ 59120840 (-) False XLOC_017022
TCONS_00033439 lncRNA downstream 262192 59094437 ~ 59116974 (-) False XLOC_017022
TCONS_00034025 lncRNA downstream 262294 59093307 ~ 59116872 (-) False XLOC_017022
TCONS_00034024 lncRNA downstream 275196 59093307 ~ 59103970 (-) False XLOC_017022
TCONS_00034023 lncRNA downstream 276999 59093307 ~ 59102167 (-) False XLOC_017022
TCONS_00033219 mRNA downstream 2431 59367989 ~ 59376735 (-) True XLOC_017035
TCONS_00033218 mRNA downstream 2767 59367429 ~ 59376399 (-) False XLOC_017035
TCONS_00033217 mRNA downstream 33246 59339650 ~ 59345920 (-) True XLOC_017034
TCONS_00033215 mRNA downstream 51867 59312776 ~ 59327299 (-) True XLOC_017032
TCONS_00033214 mRNA downstream 75828 59297642 ~ 59303338 (-) True XLOC_017031
TCONS_00033216 other downstream 42203 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033197 other downstream 276914 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033196 other downstream 340854 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033190 other downstream 509713 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033188 other downstream 742374 58636676 ~ 58636792 (-) True XLOC_017010

Expression Profile

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