RNA id: TCONS_00034024


Basic Information

Item Value
RNA id TCONS_00034024
length 1449
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_017022
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 59093307 ~ 59120840 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTTTTTCACATGTAGAGATATAAAAGGGCTGTAATGAGAGTATGAAGAGGTGGAGTCTGAGCATCAGGGCTGGACTCTTCATTTGTAAAGAGGTCAGTCGCTGCTGTTCTGAGGACTGTCAACATGTGCTTCATCTGCACTCCTATATTCAGCTCTTTCTGCCTTTATTTAAACACAAACCTGCACTCTGTGGATTAGTAAAGCTTGTGAAGTATGCCAATGACTTGAGCATCAGACAGTAAGCATGTGCCGAAAGCGTGTCAGCGATGTTGAGCTCAACTTCAGCCCATACAGGTAATGCAAAACTACCTACTGTTCATCTACTGCCGCTGAATCTGTTTTAAAACTCACAGTACATGCATCATATATCTTAATATGCGCTTCATAAAGATAATTCTACAGCGCGGTTTGCCTAATTTGATTCAGTTTTTTTCTCAGTACAGCTCTAAAATAGCATTAGGATGCTAATGTTGTGATTTACATTTGTGTgcgtttgtgagtgtgtgtgttgatctACGGCTGTATTTTGCTTAGAGGGTTTCTATTTCATTTTTCTGAATTTACAAGCCAGTAGAAACTAGATTTGTGCTTTAAATGCATGTTGCCAGATAAATGCTTTATATCAGCACTGTTATGAACAAAAAAACAGCGGGTGtgataaaaaaaactgcagaatAAACTAGGATTGTTCAATTAAACTGCTTAAATTGAGcatatttgttgtattttctttATGAAATCATCCCTGATGGAGTCAGTCAGGCTTAGTGTTTATAATcagtaataaaaaatagaaaatgtttCACCACGAACTCCAGATCTTTGTGTACTGAAAACTGTGTGAAGTGGATACCTGTAAATCTAAGCTGCTCTgaatttactatttttattatgatCTTCACATAATAAGttgaagtgtatatatatatatatatatatacatacacttccggtcaaaagtttggggtcagccTTTTCCTGCTGACCATGGCTGCATTTATTCCATCCAAAATACAGTACACATAGTAAaatagtgaaatgttattgcactataaaataactgatcAAAAGTAGttcataatttaatgtaataatttattccagtgatttcaaagatgcattttcagcttcattactccaatcTTTAGAgctacatgatccttcagaaatcactctaatatattgttattattaatggtagtattaataaaaacaatgactggagtaataattttattcgaaactacatacaataagaaagcagttggtttaaattgtaataaacatttaccatttttttttacatttaatacatgccgccttgatgaacagaaaaattttctttaaaaaagaaaacagaaaaaaaactgaccccaaactttgacCGTTGACACacactgtgtgtgtatattatatattgctggataagttggctgttaattccgct

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033438 lncRNA downstream 3872 59086464 ~ 59089435 (-) True XLOC_017021
TCONS_00033437 lncRNA downstream 9693 59075775 ~ 59083614 (-) True XLOC_017020
TCONS_00034022 lncRNA downstream 167791 58922622 ~ 58925516 (-) True XLOC_017018
TCONS_00034021 lncRNA downstream 205022 58885939 ~ 58888285 (-) False XLOC_017016
TCONS_00034020 lncRNA downstream 227811 58862622 ~ 58865496 (-) True XLOC_017014
TCONS_00034027 lncRNA upstream 275196 59379166 ~ 59390269 (-) False XLOC_017036
TCONS_00034029 lncRNA upstream 275196 59379166 ~ 59390464 (-) False XLOC_017036
TCONS_00034028 lncRNA upstream 275196 59379166 ~ 59390464 (-) False XLOC_017036
TCONS_00033195 mRNA downstream 173332 58914674 ~ 58919975 (-) True XLOC_017017
TCONS_00033191 mRNA downstream 190830 58887599 ~ 58902477 (-) False XLOC_017016
TCONS_00033198 mRNA upstream 31908 59135878 ~ 59145027 (-) True XLOC_017023
TCONS_00033199 mRNA upstream 50618 59154588 ~ 59157790 (-) False XLOC_017024
TCONS_00033200 mRNA upstream 51174 59155144 ~ 59157790 (-) True XLOC_017024
TCONS_00033201 mRNA upstream 70902 59174872 ~ 59178801 (-) False XLOC_017025
TCONS_00033202 mRNA upstream 73212 59177182 ~ 59178742 (-) True XLOC_017025
TCONS_00033196 other downstream 54995 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033190 other downstream 223854 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033188 other downstream 456515 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033170 other downstream 1151444 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1806049 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033216 other upstream 231811 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033220 other upstream 278458 59382428 ~ 59390464 (-) True XLOC_017036

Expression Profile

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