RNA id: TCONS_00033191


Basic Information

Item Value
RNA id TCONS_00033191
length 651
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_017016
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58885939 ~ 58902477 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgttgttgttgtggtgatGATGGCGGCTGGCGCGGAGGCCCCGGATTCCTGGTACCTGGCGCTGCTCGGTTTCGCCGAACATTTCCGAACCTCCAGTCCTCCTAAAATCCGCCTGTGCGTGCACTGCCTGCAGGCCGTCTTCCAGTTCAAGCCGCCGCAGAGGGTGGAGGCCCGCACGCATCTGCAGCTGGGCTCGGTGCTCTACCACCACACgcacacacacacacacgcgcagacAGACAGACGCGGGCTGGTTTTCAGTTCTGTACCCGCTCGTCTGCTGTGTTCCTCTGTACAGACGCTCGCTCTTTTCTTTTAACGCTCTCTCTCTGCTCTTTATTTCTTCTTCTGTAGTTTTATCAaatgcatttattagattttgtaAAGTTTGAATATTTATATGCCACATTAACAGCATTACTCTGTCGTCGTCTGCTCTGGATTAgcctcggtgtgtgtgtgtgtgtgagatctgtTGTTTGTGTAGTGTTGTAGCTTCCGCTCCTCCTGGCCTCGGTCTGTTCTCAGATCAGCTGCGCGCTCTTCTAATGACTGTATTTTtaaactcttattattattattgttgttattatttctgTGTGTCTGCTTCAGAATCATcaggattttttaaataaacttggaGAAGTGT

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0000910 cytokinesis biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050522-383 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in maintenance of mitotic sister chromatid cohesion. Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be located in membrane and nucleoplasm. Predicted to be integral component of membrane. Predicted to be part of SMC loading complex. Predicted to be active in chromatin. Orthologous to human MAU2 (MAU2 sister chromatid cohesion factor).

Ensembl:

ensembl_id ENSDART00000061638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034020 lncRNA downstream 22103 58862622 ~ 58865496 (-) True XLOC_017014
TCONS_00034019 lncRNA downstream 23071 58862622 ~ 58864528 (-) False XLOC_017014
TCONS_00034018 lncRNA downstream 23539 58862622 ~ 58864060 (-) False XLOC_017014
TCONS_00034017 lncRNA downstream 23664 58862622 ~ 58863935 (-) False XLOC_017014
TCONS_00034016 lncRNA downstream 31716 58851970 ~ 58855883 (-) True XLOC_017013
TCONS_00034022 lncRNA upstream 20145 58922622 ~ 58925516 (-) True XLOC_017018
TCONS_00033437 lncRNA upstream 173298 59075775 ~ 59083614 (-) True XLOC_017020
TCONS_00033438 lncRNA upstream 183987 59086464 ~ 59089435 (-) True XLOC_017021
TCONS_00034023 lncRNA upstream 190830 59093307 ~ 59102167 (-) False XLOC_017022
TCONS_00034024 lncRNA upstream 190830 59093307 ~ 59103970 (-) False XLOC_017022
TCONS_00033189 mRNA downstream 91905 58777364 ~ 58795694 (-) True XLOC_017012
TCONS_00033187 mRNA downstream 246955 58631830 ~ 58640644 (-) True XLOC_017009
TCONS_00033186 mRNA downstream 305936 58513535 ~ 58581663 (-) True XLOC_017008
TCONS_00033185 mRNA downstream 414827 58444873 ~ 58472772 (-) True XLOC_017007
TCONS_00033184 mRNA downstream 469761 58414598 ~ 58417838 (-) True XLOC_017005
TCONS_00033195 mRNA upstream 12197 58914674 ~ 58919975 (-) True XLOC_017017
TCONS_00033198 mRNA upstream 233401 59135878 ~ 59145027 (-) True XLOC_017023
TCONS_00033199 mRNA upstream 252111 59154588 ~ 59157790 (-) False XLOC_017024
TCONS_00033200 mRNA upstream 252667 59155144 ~ 59157790 (-) True XLOC_017024
TCONS_00033201 mRNA upstream 272395 59174872 ~ 59178801 (-) False XLOC_017025
TCONS_00033190 other downstream 18146 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033188 other downstream 250807 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033170 other downstream 945736 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033146 other downstream 1600341 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 1618441 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033196 other upstream 135718 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 199692 59102169 ~ 59102252 (-) True XLOC_017022
TCONS_00033216 other upstream 433304 59335781 ~ 59336963 (-) True XLOC_017033
TCONS_00033220 other upstream 479951 59382428 ~ 59390464 (-) True XLOC_017036

Expression Profile

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